Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   VO179_RS14785 Genome accession   NZ_CP141827
Coordinates   3094874..3095311 (-) Length   145 a.a.
NCBI ID   WP_003156588.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA14     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3089874..3100311
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS14760 (VO179_14760) - 3090893..3092029 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  VO179_RS14765 (VO179_14765) - 3092044..3092478 (+) 435 WP_012116767.1 RDD family protein -
  VO179_RS14770 (VO179_14770) - 3092596..3092874 (+) 279 WP_263612330.1 YckD family protein -
  VO179_RS14775 (VO179_14775) - 3092978..3094414 (+) 1437 WP_324636140.1 glycoside hydrolase family 1 protein -
  VO179_RS14780 (VO179_14780) nin/comJ 3094455..3094853 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  VO179_RS14785 (VO179_14785) nucA/comI 3094874..3095311 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VO179_RS14790 (VO179_14790) hxlB 3095669..3096226 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  VO179_RS14795 (VO179_14795) hxlA 3096223..3096858 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  VO179_RS14800 (VO179_14800) - 3097090..3097452 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 16072.35 Da        Isoelectric Point: 8.4850

>NTDB_id=919911 VO179_RS14785 WP_003156588.1 3094874..3095311(-) (nucA/comI) [Bacillus velezensis strain XHA14]
MKTLKALLLVLIIIAGAVAALIKGDLFSDNEQTVQKSDYDKVILFPSDRYPETAKHIKDAIKEGHSSICTIDRDGVHKRR
EQSLKHVPVKTGYDRDEWPMAVCKQGGNNASVEYISPADNRGAGSWVGHQLTNDPDGTRVLFKIK

Nucleotide


Download         Length: 438 bp        

>NTDB_id=919911 VO179_RS14785 WP_003156588.1 3094874..3095311(-) (nucA/comI) [Bacillus velezensis strain XHA14]
TTGAAAACATTAAAAGCACTGCTGCTTGTTCTTATCATCATTGCCGGAGCAGTCGCGGCCCTGATCAAGGGTGATCTTTT
CTCAGATAACGAGCAGACCGTTCAGAAGAGTGATTACGACAAAGTAATCTTATTTCCGTCCGATCGATATCCGGAAACAG
CAAAGCATATTAAGGACGCGATAAAAGAAGGACATTCCAGCATATGCACCATTGACAGAGACGGAGTACATAAGCGGCGT
GAGCAATCTCTTAAACATGTGCCCGTCAAAACGGGATACGATAGAGATGAATGGCCGATGGCGGTTTGTAAACAGGGCGG
AAATAACGCCTCCGTAGAATATATTTCTCCGGCAGACAACCGCGGAGCCGGCTCATGGGTCGGACATCAGCTTACCAATG
ATCCCGACGGAACGAGAGTATTATTTAAAATCAAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(49-131)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

73.81

86.897

0.641