Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   VO179_RS14780 Genome accession   NZ_CP141827
Coordinates   3094455..3094853 (-) Length   132 a.a.
NCBI ID   WP_039252825.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA14     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 3089455..3099853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS14755 (VO179_14755) - 3089626..3090828 (+) 1203 WP_014416870.1 GTP-binding protein -
  VO179_RS14760 (VO179_14760) - 3090893..3092029 (+) 1137 WP_025284207.1 zinc-dependent alcohol dehydrogenase -
  VO179_RS14765 (VO179_14765) - 3092044..3092478 (+) 435 WP_012116767.1 RDD family protein -
  VO179_RS14770 (VO179_14770) - 3092596..3092874 (+) 279 WP_263612330.1 YckD family protein -
  VO179_RS14775 (VO179_14775) - 3092978..3094414 (+) 1437 WP_324636140.1 glycoside hydrolase family 1 protein -
  VO179_RS14780 (VO179_14780) nin/comJ 3094455..3094853 (-) 399 WP_039252825.1 competence protein ComJ Regulator
  VO179_RS14785 (VO179_14785) nucA/comI 3094874..3095311 (-) 438 WP_003156588.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  VO179_RS14790 (VO179_14790) hxlB 3095669..3096226 (-) 558 WP_014416874.1 6-phospho-3-hexuloisomerase -
  VO179_RS14795 (VO179_14795) hxlA 3096223..3096858 (-) 636 WP_015239130.1 3-hexulose-6-phosphate synthase -
  VO179_RS14800 (VO179_14800) - 3097090..3097452 (+) 363 WP_007409352.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14993.97 Da        Isoelectric Point: 4.9712

>NTDB_id=919910 VO179_RS14780 WP_039252825.1 3094455..3094853(-) (nin/comJ) [Bacillus velezensis strain XHA14]
MNKSWKPQELAISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADGAVSFEARRNTRAFIVLRLNTSEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFHIPKGRYSLTCYSVPAEISDLHADTYIIDAASM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=919910 VO179_RS14780 WP_039252825.1 3094455..3094853(-) (nin/comJ) [Bacillus velezensis strain XHA14]
TTGAATAAATCATGGAAACCGCAAGAACTGGCCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATATGCGGAAGCTGACGGAGCTGTTTCATTTGAGGCAAGGAGAA
ATACGAGGGCATTTATCGTCCTCAGGCTTAACACAAGTGAACCGGTACCATCCTATGAGAAAAAAGCGACTGTTCCCTTT
GAGGCTGTAAAAGATGGAATTGAGATTGAAAGCGTGATGTCAAAGCGGCTTTTCTTTCATATTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCGGATACGTATATTATTGATGCAGCCTCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

75.758

100

0.758