Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   VO179_RS10310 Genome accession   NZ_CP141827
Coordinates   2194944..2195633 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain XHA14     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2189944..2200633
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS10275 (VO179_10275) - 2190142..2190624 (-) 483 WP_003151394.1 flagellar protein FlgN -
  VO179_RS10280 (VO179_10280) flgM 2190639..2190905 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VO179_RS10285 (VO179_10285) - 2190975..2191394 (-) 420 WP_324636352.1 TIGR03826 family flagellar region protein -
  VO179_RS10290 (VO179_10290) comFC 2191468..2192157 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  VO179_RS10295 (VO179_10295) - 2192163..2192447 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  VO179_RS10300 (VO179_10300) comFA 2192505..2193890 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  VO179_RS10305 (VO179_10305) - 2193998..2194846 (-) 849 WP_015418336.1 DegV family protein -
  VO179_RS10310 (VO179_10310) degU 2194944..2195633 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VO179_RS10315 (VO179_10315) degS 2195710..2196873 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  VO179_RS10320 (VO179_10320) - 2197096..2197743 (+) 648 WP_003151384.1 YigZ family protein -
  VO179_RS10325 (VO179_10325) - 2197748..2199001 (+) 1254 WP_324636351.1 LCP family protein -
  VO179_RS10330 (VO179_10330) - 2199100..2200176 (-) 1077 WP_003151382.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=919895 VO179_RS10310 WP_003219701.1 2194944..2195633(-) (degU) [Bacillus velezensis strain XHA14]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=919895 VO179_RS10310 WP_003219701.1 2194944..2195633(-) (degU) [Bacillus velezensis strain XHA14]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTACCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1