Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   VO179_RS10290 Genome accession   NZ_CP141827
Coordinates   2191468..2192157 (-) Length   229 a.a.
NCBI ID   WP_197093073.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA14     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2186468..2197157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS10255 (VO179_10255) fliW 2186559..2186990 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  VO179_RS10260 (VO179_10260) - 2187020..2187589 (-) 570 WP_007407476.1 DUF6470 family protein -
  VO179_RS10265 (VO179_10265) flgL 2187680..2188597 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  VO179_RS10270 (VO179_10270) flgK 2188609..2190126 (-) 1518 WP_025285351.1 flagellar hook-associated protein FlgK -
  VO179_RS10275 (VO179_10275) - 2190142..2190624 (-) 483 WP_003151394.1 flagellar protein FlgN -
  VO179_RS10280 (VO179_10280) flgM 2190639..2190905 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  VO179_RS10285 (VO179_10285) - 2190975..2191394 (-) 420 WP_324636352.1 TIGR03826 family flagellar region protein -
  VO179_RS10290 (VO179_10290) comFC 2191468..2192157 (-) 690 WP_197093073.1 phosphoribosyltransferase family protein Machinery gene
  VO179_RS10295 (VO179_10295) - 2192163..2192447 (-) 285 WP_003151389.1 late competence development ComFB family protein -
  VO179_RS10300 (VO179_10300) comFA 2192505..2193890 (-) 1386 WP_040238815.1 DEAD/DEAH box helicase Machinery gene
  VO179_RS10305 (VO179_10305) - 2193998..2194846 (-) 849 WP_015418336.1 DegV family protein -
  VO179_RS10310 (VO179_10310) degU 2194944..2195633 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  VO179_RS10315 (VO179_10315) degS 2195710..2196873 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25270.84 Da        Isoelectric Point: 8.0838

>NTDB_id=919893 VO179_RS10290 WP_197093073.1 2191468..2192157(-) (comFC) [Bacillus velezensis strain XHA14]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSRFEKIEGPVCSICGRPQESNEKCADCAARESKTEKHFLLRQNRSVY
LYNDAMKDSLARFKFRGDTKIIQAFERDFSAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=919893 VO179_RS10290 WP_197093073.1 2191468..2192157(-) (comFC) [Bacillus velezensis strain XHA14]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCGATTTGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCCAAAACGGAAAAGCACTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATACGAAAATCATTCAAGCATTTGAACG
TGACTTTTCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598