Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VO179_RS08255 Genome accession   NZ_CP141827
Coordinates   1764293..1764937 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain XHA14     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759293..1769937
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS08220 (VO179_08220) - 1760478..1760909 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  VO179_RS08225 (VO179_08225) - 1760909..1761250 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  VO179_RS08230 (VO179_08230) - 1761243..1762724 (+) 1482 WP_072176756.1 Na+/H+ antiporter subunit D -
  VO179_RS08235 (VO179_08235) - 1762730..1763206 (+) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  VO179_RS08240 (VO179_08240) - 1763206..1763490 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  VO179_RS08245 (VO179_08245) mnhG 1763474..1763848 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  VO179_RS08250 (VO179_08250) - 1763888..1764271 (-) 384 WP_014418761.1 hotdog fold thioesterase -
  VO179_RS08255 (VO179_08255) comA 1764293..1764937 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  VO179_RS08260 (VO179_08260) comP 1765018..1767324 (-) 2307 WP_324636435.1 sensor histidine kinase Regulator
  VO179_RS08265 (VO179_08265) comX 1767343..1767519 (-) 177 WP_015240484.1 competence pheromone ComX -
  VO179_RS08270 (VO179_08270) - 1767534..1768409 (-) 876 WP_122504180.1 polyprenyl synthetase family protein -
  VO179_RS08275 (VO179_08275) degQ 1768561..1768701 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  VO179_RS08280 (VO179_08280) - 1769164..1769505 (+) 342 WP_007408677.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=919888 VO179_RS08255 WP_003152052.1 1764293..1764937(-) (comA) [Bacillus velezensis strain XHA14]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=919888 VO179_RS08255 WP_003152052.1 1764293..1764937(-) (comA) [Bacillus velezensis strain XHA14]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGTGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864