Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   VO179_RS05245 Genome accession   NZ_CP141827
Coordinates   1196316..1197353 (-) Length   345 a.a.
NCBI ID   WP_154817564.1    Uniprot ID   -
Organism   Bacillus velezensis strain XHA14     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1191316..1202353
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO179_RS05195 (VO179_05195) tasA 1191550..1192335 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  VO179_RS05200 (VO179_05200) sipW 1192400..1192984 (-) 585 WP_015240205.1 signal peptidase I SipW -
  VO179_RS05205 (VO179_05205) tapA 1192956..1193627 (-) 672 WP_324636720.1 amyloid fiber anchoring/assembly protein TapA -
  VO179_RS05210 (VO179_05210) - 1193886..1194215 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  VO179_RS05215 (VO179_05215) - 1194255..1194434 (-) 180 WP_003153093.1 YqzE family protein -
  VO179_RS05220 (VO179_05220) comGG 1194491..1194868 (-) 378 WP_015417814.1 competence type IV pilus minor pilin ComGG Machinery gene
  VO179_RS05225 (VO179_05225) comGF 1194869..1195264 (-) 396 WP_324636718.1 competence type IV pilus minor pilin ComGF -
  VO179_RS05230 (VO179_05230) comGE 1195278..1195592 (-) 315 WP_324636717.1 competence type IV pilus minor pilin ComGE -
  VO179_RS05235 (VO179_05235) comGD 1195576..1196013 (-) 438 WP_015417817.1 competence type IV pilus minor pilin ComGD Machinery gene
  VO179_RS05240 (VO179_05240) comGC 1196003..1196269 (-) 267 WP_050515801.1 competence type IV pilus major pilin ComGC Machinery gene
  VO179_RS05245 (VO179_05245) comGB 1196316..1197353 (-) 1038 WP_154817564.1 competence type IV pilus assembly protein ComGB Machinery gene
  VO179_RS05250 (VO179_05250) comGA 1197340..1198410 (-) 1071 WP_007408320.1 competence type IV pilus ATPase ComGA Machinery gene
  VO179_RS05255 (VO179_05255) - 1198603..1199553 (-) 951 WP_007408319.1 magnesium transporter CorA family protein -
  VO179_RS05260 (VO179_05260) - 1199699..1201000 (+) 1302 WP_324636716.1 hemolysin family protein -
  VO179_RS05265 (VO179_05265) - 1201038..1201868 (-) 831 WP_015417821.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39557.89 Da        Isoelectric Point: 9.5935

>NTDB_id=919874 VO179_RS05245 WP_154817564.1 1196316..1197353(-) (comGB) [Bacillus velezensis strain XHA14]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYQVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQIKKMLRYPMFLISSVCVMFYILQSLIIPQFSGIYQSMNMNTSGATAFIFAFF
RHFHEACALALSAAFCLFLYVWFLCKKKSPQDKMLIVVKIPLLGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEAEMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGLLHRELYTYSQFMMERLEQNAAKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=919874 VO179_RS05245 WP_154817564.1 1196316..1197353(-) (comGB) [Bacillus velezensis strain XHA14]
ATGAAGCGGATTAAACGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGTGAAATGACGGAAAAAGG
ATACAGTCTGATTGAAGGGCTCAGACTGCTGAAACTCCAGCTGCATAAACGTCAGCTTGCAGAGCTGACGGACGGAATCC
GACGGCTGAGGGAAGGTGATGCGTTTTACCAAGTGCTTGAGGCACTGTCTTTTCACAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAGAAACACGGGGAATTGCCGGGGGCGATGAAACAAAGCGGCGAATTATTACAGAGAAAGCTCATGCAGACGAA
TCAAATCAAAAAAATGCTCCGGTATCCGATGTTTTTAATTTCTTCCGTCTGTGTCATGTTTTATATCCTGCAAAGTTTAA
TCATTCCGCAGTTTTCTGGGATTTATCAATCAATGAATATGAATACATCCGGTGCGACTGCTTTCATCTTTGCATTTTTT
CGGCATTTTCATGAAGCCTGCGCACTGGCGCTGTCCGCCGCTTTCTGCTTGTTTTTGTACGTTTGGTTCTTATGTAAGAA
AAAATCCCCGCAAGATAAAATGCTGATTGTTGTGAAAATCCCCCTATTAGGAAAAGCGGCCGTTCTTTTTAACAGCTACT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGCCTTTCTATCTATGACAGCTTAACAGCTTTTAAAGAACAATCT
TTTCTGCCTTTTTATCGAGAAGAAGCAGAGATGCTCATTACACGTCTGAAAGCCGGAGAAACCATAGAATCCGCTCTTTC
TGGGCATCCGTGTTATGAAAAAGACCTTGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCCTGCTTCACCGCGAACTTT
ATACGTACAGCCAGTTTATGATGGAGCGTCTTGAACAAAACGCGGCGAAGTATACCGGCATTCTCCAGCCTGTCATTTAC
GGTGTTGTGGCCGGTATGATTTTAATTGTCTACATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.944

93.623

0.617