Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   VO180_RS04820 Genome accession   NZ_CP141826
Coordinates   973431..974075 (+) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain XHA16     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 968431..979075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VO180_RS04795 (VO180_04795) - 968863..969204 (-) 342 WP_007408677.1 hypothetical protein -
  VO180_RS04800 (VO180_04800) degQ 969667..969807 (+) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  VO180_RS04805 (VO180_04805) - 969959..970834 (+) 876 WP_122504180.1 polyprenyl synthetase family protein -
  VO180_RS04810 (VO180_04810) comX 970849..971025 (+) 177 WP_015240484.1 competence pheromone ComX -
  VO180_RS04815 (VO180_04815) comP 971044..973350 (+) 2307 WP_324636435.1 sensor histidine kinase Regulator
  VO180_RS04820 (VO180_04820) comA 973431..974075 (+) 645 WP_003152052.1 response regulator transcription factor Regulator
  VO180_RS04825 (VO180_04825) - 974097..974480 (+) 384 WP_014418761.1 hotdog fold thioesterase -
  VO180_RS04830 (VO180_04830) mnhG 974520..974894 (-) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  VO180_RS04835 (VO180_04835) - 974878..975162 (-) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  VO180_RS04840 (VO180_04840) - 975162..975638 (-) 477 WP_017419419.1 Na+/H+ antiporter subunit E -
  VO180_RS04845 (VO180_04845) - 975644..977125 (-) 1482 WP_072176756.1 Na+/H+ antiporter subunit D -
  VO180_RS04850 (VO180_04850) - 977118..977459 (-) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  VO180_RS04855 (VO180_04855) - 977459..977890 (-) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=919799 VO180_RS04820 WP_003152052.1 973431..974075(+) (comA) [Bacillus velezensis strain XHA16]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=919799 VO180_RS04820 WP_003152052.1 973431..974075(+) (comA) [Bacillus velezensis strain XHA16]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGTGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864