Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV36_RS04985 Genome accession   NZ_AP025483
Coordinates   1065033..1066421 (+) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio echinoideorum strain DSM 107264     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1060033..1071421
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS04965 rsxB 1060603..1061196 (-) 594 WP_004734040.1 electron transport complex subunit RsxB -
  OCV36_RS04970 rsxA 1061199..1061777 (-) 579 WP_046222689.1 electron transport complex subunit RsxA -
  OCV36_RS04980 uvrB 1062729..1064759 (+) 2031 WP_135454499.1 excinuclease ABC subunit UvrB -
  OCV36_RS04985 luxO 1065033..1066421 (+) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV36_RS04990 luxU 1066446..1066790 (+) 345 WP_017076652.1 quorum-sensing phosphorelay protein LuxU -
  OCV36_RS04995 - 1066871..1067758 (-) 888 WP_102554373.1 YvcK family protein -
  OCV36_RS05000 moaA 1068094..1069083 (+) 990 WP_026012219.1 GTP 3',8-cyclase MoaA -
  OCV36_RS05005 moaB 1069175..1069687 (+) 513 WP_135454501.1 molybdenum cofactor biosynthesis protein B -
  OCV36_RS05010 moaC 1069700..1070179 (+) 480 WP_017076655.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV36_RS05015 moaD 1070176..1070421 (+) 246 WP_004734025.1 molybdopterin synthase sulfur carrier subunit -
  OCV36_RS05020 moaE 1070424..1070897 (+) 474 WP_135454503.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=91966 OCV36_RS04985 WP_004734031.1 1065033..1066421(+) (luxO) [Vibrio echinoideorum strain DSM 107264]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=91966 OCV36_RS04985 WP_004734031.1 1065033..1066421(+) (luxO) [Vibrio echinoideorum strain DSM 107264]
ATGCAATCAAAAACGCTAGATAACAAATCAAAGTATTTGTTGATGGTAGAGGATACGGCTTCGGTAGCGGCTTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTCGGCACTGGTCGTGATGCAATTGAGAGTTTGAATCATCGAA
TCCCAGACCTCATTTTATTAGATCTACGTTTACCCGATATGACGGGTATGGACGTGCTATTTGCCGTAAAACAAAAATAC
CCTGAAGTTCCAGTTATTTTCATGACCGCTCACGGCTCTATTGACACCGCCGTAGAAGCAATGCGTCATGGCTCTCAAGA
TTTCCTGATCAAACCGTGTGAAGCCGATCGACTCCGTATTACGGTGAATAACGCGATACGTAAAGCGACCAAGCTGAAGA
ACAGCTCTGAACATCCTGGAAATCAAAACTACCAAGGGTTCATTGGTAGTAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGACTCTGCCGCATCGAGTAAAGCCAGTATTTTCATCACGGGTGAAAGTGGAACCGGTAAAGAGGTGTGTGCAGAAGC
TATCCATGCTGCGAGTAAACGTGGCGATAAGCCATTCATCGCGATCAACTGTGCGGCTATTCCTAAAGATTTGATCGAAA
GTGAACTGTTTGGCCACGTTAAAGGCGCCTTTACTGGCGCTGCCACCGATCGCCAAGGTGCTGCTGAATTGGCTGACGGC
GGAACTCTGTTTCTCGATGAGTTGTGCGAGATGGATCTTGAGCTGCAAACCAAGCTTCTTCGCTTTATTCAAACCGGTAC
TTTTCAAAAAGTAGGCTCTTCGAAGATGAAGAGTGTGGATGTGCGTTTTGTTTGTGCAACCAACCGTGACCCTTGGAAAG
AAGTTCAAGAAGGTCGCTTTAGAGAAGATTTGTACTACCGTTTATATGTGATTCCTTTGCATTTACCGCCATTGCGTGAG
CGTGGCGAGGATGTCATCGAGATTGCATACTCGCTATTGGGTTACATGTCAGTTGAAGAGGGCAAAGCGTTTGTTCGTTT
TGCTCAAGAGGTGCTTGATCGCTTCAATCAATACGAGTGGCCGGGTAACGTTCGTCAGTTACAAAACGTATTGCGAAATG
TGGTGGTACTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCACCCCCTTTGAATCAGCCGATTGAAAACAGTCTG
CGATTGAAAGAGAAGCAGAACGAAGATATTACCGTGAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAGGCCATAAAAGCGTGTGATGGTAACATTCCCCGTGCGGCCGGTTTTTTGGATGTCAGTCCATCGACGATATATCGTA
AATTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment