Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV36_RS02815 Genome accession   NZ_AP025483
Coordinates   573633..574238 (-) Length   201 a.a.
NCBI ID   WP_017073127.1    Uniprot ID   A0A2N7JRQ0
Organism   Vibrio echinoideorum strain DSM 107264     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 568633..579238
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS02805 aceF 569895..571769 (+) 1875 WP_135457160.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCV36_RS02810 lpdA 572012..573439 (+) 1428 WP_004735450.1 dihydrolipoyl dehydrogenase -
  OCV36_RS02815 opaR 573633..574238 (-) 606 WP_017073127.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV36_RS02820 hpt 574575..575105 (+) 531 WP_017073126.1 hypoxanthine phosphoribosyltransferase -
  OCV36_RS02825 can 575220..575879 (-) 660 WP_135457158.1 carbonate dehydratase -
  OCV36_RS02830 - 576166..577797 (+) 1632 WP_210114726.1 SulP family inorganic anion transporter -
  OCV36_RS02835 - 578128..579045 (+) 918 WP_135457154.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23278.52 Da        Isoelectric Point: 6.2196

>NTDB_id=91964 OCV36_RS02815 WP_017073127.1 573633..574238(-) (opaR) [Vibrio echinoideorum strain DSM 107264]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAHDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETNEELSNLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=91964 OCV36_RS02815 WP_017073127.1 573633..574238(-) (opaR) [Vibrio echinoideorum strain DSM 107264]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCCTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTGTTCTCTCGTCGTGGCATTGGCCGCGGTGGACATGCTGATATAGCAGACATTGCTCAGGTATCAGTGGCAACCGTAT
TTAACTACTTCCCAACTCGTGAAGATCTTGTTGATGAAGTGCTTAATCACGTGGTTCGCCAATTCTCGAACTTCCTTTCA
GACAATATCGATCTCGATATTCACGCAAAAGAGAACTTACATAATATTGCGACTGAAATGGTGACTTTGGTGGCTCACGA
TTGCCATTGGCTGAATGTGTGGTTCGAATGGAGTGCGTCTACTCGTGATGAAGTATGGCCTCTATTCGTAACAACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAGCGTGGCGAAGTTTGTGACGATCACGATCCTAAG
CATCTTGCGAATCTGTTCCACGGCATTTGCTACTCACTATTCATTCAAGCGAAACGTGTAGAAACAAATGAAGAGCTGTC
TAACCTGACAGACAGCTACCTGAACATGTTGTGTATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JRQ0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.869

99.005

0.731
  hapR Vibrio cholerae strain A1552

73.869

99.005

0.731

Multiple sequence alignment