Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   VCJ09_RS21330 Genome accession   NZ_CP141799
Coordinates   4638614..4640689 (-) Length   691 a.a.
NCBI ID   WP_324734710.1    Uniprot ID   -
Organism   Pseudomonas paeninsulae strain IT1137     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4633614..4645689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VCJ09_RS21315 - 4635350..4636924 (-) 1575 WP_324732029.1 AAA family ATPase -
  VCJ09_RS21320 aroB 4636935..4638038 (-) 1104 WP_324732030.1 3-dehydroquinate synthase -
  VCJ09_RS21325 aroK 4638090..4638608 (-) 519 WP_324732031.1 shikimate kinase AroK -
  VCJ09_RS21330 pilQ 4638614..4640689 (-) 2076 WP_324734710.1 type IV pilus secretin PilQ Machinery gene
  VCJ09_RS21335 pilP 4640744..4641271 (-) 528 WP_324732032.1 type 4a pilus biogenesis lipoprotein PilP -
  VCJ09_RS21340 pilO 4641268..4641891 (-) 624 WP_324732033.1 type 4a pilus biogenesis protein PilO -
  VCJ09_RS21345 pilN 4641888..4642463 (-) 576 WP_324732034.1 type 4a pilus biogenesis protein PilN -
  VCJ09_RS21350 pilM 4642463..4643527 (-) 1065 WP_079203425.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74394.44 Da        Isoelectric Point: 4.8413

>NTDB_id=919562 VCJ09_RS21330 WP_324734710.1 4638614..4640689(-) (pilQ) [Pseudomonas paeninsulae strain IT1137]
MNSPLSHLGISLLALLLSPALLAANLQALDVSALPGDRVELKLTFDEPVLAPRGYTIEQPARIALDFPGVSSKLGTKNRE
LGVGNARSVTVVEAKDRTRLIINLTSLAPYNTRADGNNLYVVVGEGASGSASVQPTAAAAVVSTAAPVKSYAARGKSISN
IDFQRGEQGEGNVVITLSDASVSPDIQEQGGKIRLDFAKTQLPEALRVRLDVKDFATPVQFVSATGSADKASIVIEPTGF
YDYLAYQTDNKLTLSIKPLTQDEVETRKSERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVRGNITLRLQNV
PWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQIAELAPLRRELIQVNYAKATDMAKLFQSVTSAEGR
ADERGSITVDDRTNSIIAYQTQDRLDELRRIVSQLDIPVRQVMVEARIVEANVDFDKSLGVEWRGVSLGDNNFIAGGTNS
LVKGTDPLEIQAGTFVDLGATGRNVGLNLGFITNNTILDLELSAMEKTGNGEVISQPKVVTSDKETAKILKGSEVPYQEA
SSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFSNAAASGGVPAINKNEVNAKVLVADGETIVIGGVFTNT
QSKSVDKVPFLGDIPYLGVLFRRDLVKDSKSELLIFLTPRIMNTQAVAVSR

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=919562 VCJ09_RS21330 WP_324734710.1 4638614..4640689(-) (pilQ) [Pseudomonas paeninsulae strain IT1137]
ATGAATAGCCCCTTATCGCATCTAGGTATCTCTCTATTAGCACTGTTGCTATCGCCGGCCTTGTTGGCCGCTAACCTGCA
GGCGCTTGATGTTTCTGCGTTGCCAGGTGATCGCGTCGAGTTGAAGTTGACGTTCGATGAGCCGGTGCTTGCTCCGCGCG
GCTATACGATAGAGCAGCCGGCGCGGATTGCCCTGGATTTCCCGGGTGTTTCCAGCAAGTTGGGTACGAAGAACCGAGAG
CTGGGTGTGGGTAACGCGCGCAGTGTCACCGTGGTCGAAGCCAAAGATCGGACTAGGTTGATCATCAATCTGACCAGCTT
GGCGCCCTACAATACGCGGGCCGATGGCAACAACCTTTATGTTGTGGTTGGCGAAGGGGCGTCCGGCTCAGCGTCAGTGC
AACCGACGGCTGCAGCGGCAGTTGTCAGTACCGCTGCGCCGGTAAAGAGCTATGCCGCACGTGGCAAGTCTATTAGCAAT
ATTGATTTCCAACGGGGCGAGCAAGGCGAGGGTAATGTTGTGATTACCCTGTCGGATGCTTCGGTAAGCCCTGATATTCA
AGAGCAGGGTGGCAAGATTCGCCTGGACTTCGCCAAGACTCAATTGCCTGAGGCGCTACGCGTTCGCCTGGACGTCAAGG
ATTTTGCTACACCGGTGCAGTTCGTCAGTGCCACGGGCTCGGCTGACAAAGCGAGTATCGTGATCGAGCCGACAGGTTTC
TATGATTATCTGGCATATCAAACCGACAATAAACTCACGCTCAGCATCAAGCCCTTGACCCAGGATGAAGTTGAAACGCG
TAAAAGCGAGCGGTTTGCTTACAGTGGCGAGAAGTTGTCCTTGAACTTCCAGGACATCGATGTTCGCTCAGTACTGCAGT
TGATCGCGGACTTCACCGATCTTAACCTAGTGGCCAGTGATACTGTGCGGGGCAACATTACCTTGCGCTTGCAGAATGTG
CCTTGGGATCAGGCGCTGGATTTGGTGCTGAAAACCAAAGGCCTGGACAAGCGCAAAGTGGGCAATGTGCTGTTAGTGGC
ACCGGCGGATGAGATTGCCGCGCGCGAGCGTCAAGAGCTCGAGTCGCAGAAACAGATTGCGGAATTAGCGCCACTGCGGC
GCGAGCTGATTCAAGTGAACTATGCCAAGGCCACCGACATGGCCAAGTTGTTCCAGTCGGTGACCAGTGCAGAGGGTCGT
GCCGACGAGCGTGGTTCGATAACGGTCGACGACAGAACCAACAGTATCATTGCCTACCAGACTCAGGATCGCCTGGATGA
GTTGCGCAGAATCGTCTCGCAGCTCGACATTCCGGTGCGCCAGGTGATGGTCGAGGCACGGATCGTCGAGGCCAATGTCG
ACTTCGACAAGTCGCTGGGCGTCGAGTGGCGTGGGGTGAGTCTCGGCGATAACAACTTTATCGCTGGCGGGACCAATAGC
TTAGTCAAGGGAACGGATCCTCTTGAGATTCAAGCGGGTACTTTTGTTGATCTGGGCGCCACCGGTAGGAATGTTGGGCT
GAACCTCGGGTTTATCACCAATAACACCATCCTTGATCTTGAATTATCCGCCATGGAGAAAACCGGCAACGGTGAGGTTA
TTTCCCAGCCTAAAGTTGTGACCTCGGATAAAGAGACGGCGAAAATATTGAAGGGTTCTGAGGTTCCCTATCAAGAAGCG
AGCTCAAGTGGTGCTACGAGCACCTCTTTCAAGGAGGCCGCGCTTTCGTTGGAGGTGACGCCGCAGATTACGCCGGATAA
TCGCATCATCATGGAGGTCAAGGTCACCAAGGATGCACCGGATTTCTCTAATGCGGCTGCGAGTGGTGGGGTTCCTGCGA
TTAATAAAAATGAGGTGAATGCCAAGGTTCTGGTTGCCGACGGTGAAACTATTGTCATTGGTGGCGTGTTTACCAACACC
CAGAGCAAGTCGGTAGACAAAGTTCCGTTCCTTGGCGATATTCCGTACTTGGGTGTCCTGTTCAGGCGTGACCTGGTCAA
GGATAGCAAGTCGGAACTGTTGATTTTCCTCACTCCGCGCATCATGAACACTCAGGCTGTAGCGGTATCTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II and III secretion system protein (Secretin)

(524-682)

AMIN domain (AMIN)

(39-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.477

100

0.773
  comQ Acinetobacter baylyi ADP1

42.711

99.276

0.424
  pilQ Acinetobacter baumannii strain A118

41.345

100

0.418
  pilQ Acinetobacter baumannii D1279779

41.345

100

0.418
  pilQ Legionella pneumophila strain Lp02

38.032

98.553

0.375
  pilQ Legionella pneumophila strain ERS1305867

38.032

98.553

0.375