Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV36_RS02585 Genome accession   NZ_AP025483
Coordinates   528498..529478 (+) Length   326 a.a.
NCBI ID   WP_029225096.1    Uniprot ID   -
Organism   Vibrio echinoideorum strain DSM 107264     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 523498..534478
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV36_RS02555 ispD 523750..524451 (+) 702 WP_135457194.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  OCV36_RS02560 ispF 524454..524933 (+) 480 WP_135457274.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV36_RS02565 truD 524956..526002 (+) 1047 WP_135457192.1 tRNA pseudouridine(13) synthase TruD -
  OCV36_RS02570 surE 526079..526822 (+) 744 WP_135457190.1 5'/3'-nucleotidase SurE -
  OCV36_RS02575 - 526823..527449 (+) 627 WP_017075372.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV36_RS02580 nlpD 527485..528399 (+) 915 WP_029225097.1 murein hydrolase activator NlpD -
  OCV36_RS02585 rpoS 528498..529478 (+) 981 WP_029225096.1 RNA polymerase sigma factor RpoS Regulator
  OCV36_RS02590 mutS 529622..532183 (-) 2562 WP_017075369.1 DNA mismatch repair protein MutS -
  OCV36_RS02595 pncC 532308..532802 (+) 495 WP_135457188.1 nicotinamide-nucleotide amidase -
  OCV36_RS02600 recA 532941..533978 (+) 1038 WP_029225094.1 recombinase RecA Machinery gene

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37302.55 Da        Isoelectric Point: 5.6668

>NTDB_id=91956 OCV36_RS02585 WP_029225096.1 528498..529478(+) (rpoS) [Vibrio echinoideorum strain DSM 107264]
MSISNAVTKQEFDLNQATTEPEKLGKAKRAVTKKTETKEETEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDNDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=91956 OCV36_RS02585 WP_029225096.1 528498..529478(+) (rpoS) [Vibrio echinoideorum strain DSM 107264]
ATGAGTATAAGCAATGCAGTAACCAAACAAGAGTTCGATCTTAACCAAGCAACCACGGAACCGGAAAAACTTGGAAAAGC
AAAACGAGCTGTCACTAAGAAAACCGAAACGAAAGAAGAGACCGAAGTTACATCTAAAAGTTTAGATGCTACTCAACTCT
ACTTGGGTGAAATCGGTTTCTCACCATTACTTACCGCTGAAGAAGAAGTGCTTTATGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAAAGTAACCTGCGTTTGGTAGTGAAAATTTCTCGTCGTTACAGCAATCGTGGCCT
TGCACTTCTCGATCTAATTGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAGTTTGATCCTGAACGTGGCTTCC
GCTTTTCAACTTACGCGACATGGTGGATTCGTCAAACCATTGAACGTGCTTTAATGAATCAGACTCGCACCATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACGGCAAGAGAGCTATCTCAAAAGCTTGACCATGAACCAAC
AGCTGAAGAGATTGCCTCTAAGTTAGATAAACCTGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGTT
CTGTCGATACGCCAATAGGTGGTGACGGTGAAAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAATGATATTAAGAACTCGTTGATTTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTATT
GGCACGTCGATTTGGACTACTAGGGTATGAACCGTCAACATTAGAAGAAGTGGGCCGTGAAATCAGCCTGACTCGTGAAC
GTGTTCGTCAAATCCAAGTTGAAGGTCTTCGTCGTCTACGTGAGATTCTAATCAAGCAAGGCTTGAACATGGAAAATCTG
TTCAACGTAGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

80.712

100

0.834

Multiple sequence alignment