Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   AB2M34_RS04550 Genome accession   NZ_CP161903
Coordinates   863383..864018 (+) Length   211 a.a.
NCBI ID   WP_014480830.1    Uniprot ID   -
Organism   Bacillus subtilis strain DYJ24     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 858383..869018
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M34_RS04525 (AB2M34_04525) liaI 859510..859890 (+) 381 WP_003228504.1 cell envelope stress-induced membrane anchor protein LiaI -
  AB2M34_RS04530 (AB2M34_04530) liaH 859917..860594 (+) 678 WP_129134386.1 stress responsive protein LiaH -
  AB2M34_RS04535 (AB2M34_04535) liaG 860695..861567 (+) 873 WP_129134385.1 DUF4097 domain-containing protein -
  AB2M34_RS04540 (AB2M34_04540) liaF 861601..862326 (+) 726 WP_069964309.1 LiaRS two-component regulatory system accessory protein LiaF -
  AB2M34_RS04545 (AB2M34_04545) liaS 862323..863405 (+) 1083 WP_014480831.1 two-component system sensor histidine kinase LiaS -
  AB2M34_RS04550 (AB2M34_04550) vraR 863383..864018 (+) 636 WP_014480830.1 two-component system response regulator LiaR Regulator
  AB2M34_RS04555 (AB2M34_04555) gerAC 864026..865141 (-) 1116 WP_095010576.1 spore germination receptor protein GerAC -
  AB2M34_RS04560 (AB2M34_04560) gerAB 865138..866235 (-) 1098 WP_014480828.1 spore germination receptor protein GerAB -
  AB2M34_RS04565 (AB2M34_04565) gerAA 866204..867652 (-) 1449 WP_095010577.1 spore germination receptor protein GerAA -
  AB2M34_RS04570 (AB2M34_04570) yvzF 867770..867955 (+) 186 WP_003221676.1 YvzF family protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 23197.79 Da        Isoelectric Point: 4.9049

>NTDB_id=919459 AB2M34_RS04550 WP_014480830.1 863383..864018(+) (vraR) [Bacillus subtilis strain DYJ24]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVIGEASDGSEGVRLAAELSPDVILMDLVMEGMDGIQATKQICRELSDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIADAIRAASKGEPKLESKVAGKVLSRLRHSGENELPHESLTKRELEILFL
IAEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVN

Nucleotide


Download         Length: 636 bp        

>NTDB_id=919459 AB2M34_RS04550 WP_014480830.1 863383..864018(+) (vraR) [Bacillus subtilis strain DYJ24]
GTGATTCGAGTATTATTGATTGATGATCATGAAATGGTCAGAATGGGGCTCGCGGCTTTTTTGGAGGCGCAGCCCGATAT
TGAAGTCATCGGCGAAGCATCGGACGGCAGCGAAGGTGTTCGGCTTGCTGCGGAACTGTCGCCTGATGTCATTTTAATGG
ACCTTGTCATGGAGGGCATGGATGGCATTCAAGCTACAAAGCAAATTTGCCGGGAGCTTTCTGACCCGAAAATTATTGTG
CTCACTAGCTTCATTGATGATGACAAAGTGTACCCGGTTATTGAAGCTGGCGCGCTCAGCTATCTGTTGAAAACCTCAAA
AGCGGCAGAAATCGCCGATGCCATCCGCGCCGCAAGCAAGGGAGAGCCGAAGCTGGAGTCAAAAGTGGCGGGAAAAGTAT
TATCCAGGCTGCGCCACTCAGGTGAAAACGAGCTCCCTCATGAATCGCTTACGAAACGGGAGCTCGAAATACTCTTCCTG
ATCGCAGAAGGAAAGACAAACAAAGAAATAGGCGAGGAACTGTTTATTACGATTAAAACAGTCAAAACACATATTACCAA
TATTTTATCAAAGCTGGATGTCAGTGACCGGACGCAGGCGGCGGTGTACGCACACCGAAATCATCTCGTGAATTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(148-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

52.381

99.526

0.521
  degU Bacillus subtilis subsp. subtilis str. 168

37.668

100

0.398