Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   VA243_RS05905 Genome accession   NZ_CP141774
Coordinates   1215414..1215989 (-) Length   191 a.a.
NCBI ID   WP_324714465.1    Uniprot ID   -
Organism   Helicobacter pylori strain P07353     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1210414..1220989
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA243_RS05890 - 1212140..1212679 (-) 540 WP_324714464.1 restriction endonuclease subunit S -
  VA243_RS05895 - 1212706..1213314 (-) 609 WP_411377765.1 restriction endonuclease subunit S -
  VA243_RS05900 - 1213343..1215381 (-) 2039 Protein_1141 class I SAM-dependent DNA methyltransferase -
  VA243_RS05905 comFC 1215414..1215989 (-) 576 WP_324714465.1 ComF family protein Machinery gene
  VA243_RS05910 tmk 1215977..1216552 (-) 576 WP_324714466.1 dTMP kinase -
  VA243_RS05915 coaD 1216554..1217027 (-) 474 WP_140486162.1 pantetheine-phosphate adenylyltransferase -
  VA243_RS05920 - 1217027..1217590 (-) 564 WP_154423516.1 UbiX family flavin prenyltransferase -
  VA243_RS05925 flgA 1217600..1218256 (-) 657 WP_324714467.1 flagellar basal body P-ring formation chaperone FlgA -
  VA243_RS05930 uvrD 1218253..1220298 (-) 2046 WP_324714469.1 DNA helicase UvrD -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21323.89 Da        Isoelectric Point: 9.0901

>NTDB_id=919410 VA243_RS05905 WP_324714465.1 1215414..1215989(-) (comFC) [Helicobacter pylori strain P07353]
MRCLTCLKLSFKPLCSNCLNDLPLNLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILKEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRANNPRDFTFKGDENLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=919410 VA243_RS05905 WP_324714465.1 1215414..1215989(-) (comFC) [Helicobacter pylori strain P07353]
ATGCGTTGTTTAACCTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAATTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGTGAAATAGAAGAGCTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAGTTTGTGAAAATCCTAAAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAACCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGTGCCAATAACCCACGGGATTTCACCTTCAAAGGCGATGAAAATTTAGATTATTTCTTACTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATCAAAGCGCACTTTGCAATCGCTCTTTG
CAGTGCGGATGAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Helicobacter pylori 26695

95.288

100

0.953
  ctsW Campylobacter jejuni subsp. jejuni 81-176

36.269

100

0.366