Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | VA210_RS06630 | Genome accession | NZ_CP141773 |
| Coordinates | 1367736..1368311 (+) | Length | 191 a.a. |
| NCBI ID | WP_324713598.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain P08205 | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1362736..1373311
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VA210_RS06605 | uvrD | 1363427..1365472 (+) | 2046 | WP_324714204.1 | DNA helicase UvrD | - |
| VA210_RS06610 | flgA | 1365469..1366125 (+) | 657 | WP_324713597.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| VA210_RS06615 | - | 1366135..1366698 (+) | 564 | WP_000780123.1 | UbiX family flavin prenyltransferase | - |
| VA210_RS06620 | coaD | 1366698..1367171 (+) | 474 | WP_096465575.1 | pantetheine-phosphate adenylyltransferase | - |
| VA210_RS06625 | tmk | 1367173..1367748 (+) | 576 | WP_000289738.1 | dTMP kinase | - |
| VA210_RS06630 | comFC | 1367736..1368311 (+) | 576 | WP_324713598.1 | ComF family protein | Machinery gene |
| VA210_RS06635 | - | 1368344..1370383 (+) | 2040 | WP_324713599.1 | class I SAM-dependent DNA methyltransferase | - |
| VA210_RS06640 | - | 1370442..1371584 (+) | 1143 | WP_324713600.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21382.01 Da Isoelectric Point: 9.2796
>NTDB_id=919396 VA210_RS06630 WP_324713598.1 1367736..1368311(+) (comFC) [Helicobacter pylori strain P08205]
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNTKAHFAIALCSADE
MRCLTCLKLSFKPLCLNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGAEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAVLLKGFCQGNLKPTYGRLRANNTISYAGKSLEFRTNNPRDFTFKGDKNLDYFLLDDII
TTGTTLKEALKYLKALNTKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=919396 VA210_RS06630 WP_324713598.1 1367736..1368311(+) (comFC) [Helicobacter pylori strain P08205]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTCTAAACACAAAAGCGCACTTTGCAATCGCGCTTTG
CAGTGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTTAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
AGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGCTCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCGCGGAATTTGTGAAAATCCTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGTGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATACTATTTCGTATGCCGGGAAAAGCCTGG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAATTTAGATTATTTTTTATTAGATGACATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAGCTCTAAACACAAAAGCGCACTTTGCAATCGCGCTTTG
CAGTGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
92.67 |
100 |
0.927 |
| ctsW | Campylobacter jejuni subsp. jejuni 81-176 |
37.113 |
100 |
0.377 |