Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   VA210_RS04160 Genome accession   NZ_CP141773
Coordinates   862911..863315 (-) Length   134 a.a.
NCBI ID   WP_324713301.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08205     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 857911..868315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA210_RS04110 - 858045..859127 (-) 1083 WP_324713290.1 hypothetical protein -
  VA210_RS04115 - 859117..859902 (-) 786 WP_324713292.1 hypothetical protein -
  VA210_RS04120 - 859902..860283 (-) 382 Protein_806 DUF1294 domain-containing protein -
  VA210_RS04125 - 860622..860783 (-) 162 WP_014536434.1 lysozyme -
  VA210_RS04130 - 860803..861048 (-) 246 WP_121025308.1 lysozyme -
  VA210_RS04135 - 861098..861241 (-) 144 WP_324713296.1 glycoside hydrolase family protein -
  VA210_RS04140 - 861291..861851 (-) 561 WP_324713297.1 hypothetical protein -
  VA210_RS04145 - 861835..862173 (-) 339 WP_000699916.1 hypothetical protein -
  VA210_RS04150 - 862300..862620 (-) 321 WP_324713298.1 hypothetical protein -
  VA210_RS04155 - 862634..862780 (-) 147 WP_245015044.1 tetratricopeptide repeat protein -
  VA210_RS04160 dprB 862911..863315 (-) 405 WP_324713301.1 Holliday junction resolvase RuvX Machinery gene
  VA210_RS04165 dprA 863312..864112 (-) 801 WP_324713302.1 DNA-processing protein DprA Machinery gene
  VA210_RS04170 minE 864119..864352 (-) 234 WP_000051414.1 cell division topological specificity factor MinE -
  VA210_RS04175 minD 864349..865155 (-) 807 WP_001019097.1 septum site-determining protein MinD -
  VA210_RS04180 ilvC 865180..866172 (-) 993 WP_324713309.1 ketol-acid reductoisomerase -
  VA210_RS04190 - 866421..867203 (+) 783 WP_324713310.1 NAD+ synthase -
  VA210_RS04195 - 867200..868138 (+) 939 WP_324713312.1 tetraacyldisaccharide 4'-kinase -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15170.70 Da        Isoelectric Point: 9.1629

>NTDB_id=919386 VA210_RS04160 WP_324713301.1 862911..863315(-) (dprB) [Helicobacter pylori strain P08205]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNKNQASRDLSNLLREKNIQVLVVGKPNESYADTNARIESFIKLLDFEGE
IVFINEDRSSIEAYENLGHLGKKNKRLAIKDGRLDSLSACRILERYCQQVLKKH

Nucleotide


Download         Length: 405 bp        

>NTDB_id=919386 VA210_RS04160 WP_324713301.1 862911..863315(-) (dprB) [Helicobacter pylori strain P08205]
GTGATTTTGGCATGCGATGTGGGGTTAAAACGCATTGGGATCGCTATGCTTTTAAACGGCGTTATTTTGCCTTTAGAAGC
GATCTTGCGCCACAACAAAAATCAGGCCTCTAGGGATTTGAGCAATTTATTGAGGGAAAAAAACATTCAGGTGCTAGTGG
TGGGCAAGCCCAATGAAAGCTATGCGGACACGAACGCGCGCATTGAATCTTTCATCAAACTTTTGGATTTTGAGGGCGAA
ATCGTTTTTATCAATGAAGACAGATCCAGCATAGAAGCCTATGAAAATTTAGGGCATTTGGGTAAGAAAAACAAGCGGCT
CGCTATTAAAGACGGCCGGCTAGACTCTTTGAGCGCTTGCAGGATCTTGGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
ACTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

92.537

100

0.925