Detailed information NTG0919360

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: VA211_RS00740
• Genome accession: NZ_CP141771
• Coordinates: 149774..150910 (+)
• Length: 378 a.a.
• NCBI ID: WP_324685423.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain P08204
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 144774..155910

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
VA211_RS00705	panD	145232..145582 (+)	351	WP_000142208.1	aspartate 1-decarboxylase	-
VA211_RS00710	-	145593..145886 (+)	294	WP_000347922.1	YbaB/EbfC family nucleoid-associated protein	-
VA211_RS00715	-	145886..146881 (+)	996	WP_324686334.1	PDZ domain-containing protein	-
VA211_RS00720	comB6	146889..147944 (+)	1056	WP_324686336.1	P-type conjugative transfer protein TrbL	Machinery gene
VA211_RS00725	comB7	147960..148085 (+)	126	WP_001217865.1	hypothetical protein	Machinery gene
VA211_RS00730	comB8	148082..148819 (+)	738	WP_324685419.1	virB8 family protein	Machinery gene
VA211_RS00735	comB9	148819..149781 (+)	963	WP_324685421.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
VA211_RS00740	comB10	149774..150910 (+)	1137	WP_324685423.1	DNA type IV secretion system protein ComB10	Machinery gene
VA211_RS00745	-	150976..152387 (+)	1412	Protein_144	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
VA211_RS00750	gmd	152401..153546 (+)	1146	WP_120902685.1	GDP-mannose 4,6-dehydratase	-
VA211_RS00755	-	153539..154471 (+)	933	WP_324685427.1	GDP-L-fucose synthase	-
VA211_RS00760	hypE	154722..155720 (-)	999	WP_324685429.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42137.75 Da
• Isoelectric Point: 9.9312

>NTDB_id=919360 VA211_RS00740 WP_324685423.1 149774..150910(+) (comB10) [Helicobacter pylori strain P08204]
MNKWIKGALIFVGGFATITTISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSFKEETFTSPPIDLKANTTPPKKDFSLKQLDLLASRITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFASMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEGVTNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPRENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=919360 VA211_RS00740 WP_324685423.1 149774..150910(+) (comB10) [Helicobacter pylori strain P08204]
ATGAATAAGTGGATTAAGGGGGCGCTTATTTTTGTAGGGGGTTTTGCAACGATTACAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAACCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACCT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATCAAAGCTTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTTTAAAGAAGAAACTTTTACTAGCCCTCCCATAGATTTAAAAGC
AAACACAACCCCCCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTAGCCTCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTACGAAGAAAACCTGATTTTCCCCATGGATAACCCTAAAGGGATCGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGTCAGATTGCCGGTAAAGTCATCGCGCAAGTGGAAAGCGATATTTTTGCGAGCATGGGCAAGGCCGTCTTAA
TCCCTAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGATATTAAAGGCTATAACGGCTTGGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTTCCGTTACTGCTTTCTACTCTCACTAACGGCTTATTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAAGGAGTTACCAATTTCTTTGGGGATTATCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAGGGAAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCCAGAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	95.238	100	0.952