Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB8   Type   Machinery gene
Locus tag   VA211_RS00730 Genome accession   NZ_CP141771
Coordinates   148082..148819 (+) Length   245 a.a.
NCBI ID   WP_324685419.1    Uniprot ID   -
Organism   Helicobacter pylori strain P08204     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 143082..153819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA211_RS00705 panD 145232..145582 (+) 351 WP_000142208.1 aspartate 1-decarboxylase -
  VA211_RS00710 - 145593..145886 (+) 294 WP_000347922.1 YbaB/EbfC family nucleoid-associated protein -
  VA211_RS00715 - 145886..146881 (+) 996 WP_324686334.1 PDZ domain-containing protein -
  VA211_RS00720 comB6 146889..147944 (+) 1056 WP_324686336.1 P-type conjugative transfer protein TrbL Machinery gene
  VA211_RS00725 comB7 147960..148085 (+) 126 WP_001217865.1 hypothetical protein Machinery gene
  VA211_RS00730 comB8 148082..148819 (+) 738 WP_324685419.1 virB8 family protein Machinery gene
  VA211_RS00735 comB9 148819..149781 (+) 963 WP_324685421.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  VA211_RS00740 comB10 149774..150910 (+) 1137 WP_324685423.1 DNA type IV secretion system protein ComB10 Machinery gene
  VA211_RS00745 - 150976..152387 (+) 1412 Protein_144 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  VA211_RS00750 gmd 152401..153546 (+) 1146 WP_120902685.1 GDP-mannose 4,6-dehydratase -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28531.73 Da        Isoelectric Point: 8.9830

>NTDB_id=919358 VA211_RS00730 WP_324685419.1 148082..148819(+) (comB8) [Helicobacter pylori strain P08204]
MKEKPFNSEQLAFLEELLNHQEKHLENKLFGFSVNDLDMQSVFRLERNRLKIAYKLLGLMSFIALVLAVVLISVLPLQKT
EHHFVDFLNQDKHYAIIQRADKSISSNEALARSLIGAYVLNRESINRIDDKSRYELVRLQSSSKVWQRFEDLIKTQNSIY
AQSHLEREVHIVNIAIYQQDNNPIASVSIAAKLMNENKLVYEKRYKIVLSYLFDTPDFDYASMPKNPTGFKVTRYSITEI
TNRGD

Nucleotide


Download         Length: 738 bp        

>NTDB_id=919358 VA211_RS00730 WP_324685419.1 148082..148819(+) (comB8) [Helicobacter pylori strain P08204]
ATGAAAGAAAAGCCTTTCAATAGCGAGCAGTTGGCTTTTTTAGAAGAACTTTTAAACCACCAAGAAAAGCATTTAGAAAA
CAAACTTTTTGGTTTTTCGGTGAATGATTTGGACATGCAAAGCGTGTTTAGATTAGAGAGGAACCGCTTGAAAATCGCTT
ATAAACTCTTAGGTTTGATGAGTTTTATCGCTCTTGTTTTAGCGGTTGTTTTAATCAGTGTTTTACCCCTACAAAAAACC
GAACACCATTTCGTGGATTTTTTAAACCAGGACAAGCATTACGCCATTATCCAAAGAGCGGATAAAAGCATTTCCAGTAA
TGAAGCGTTGGCTCGTTCGCTCATTGGGGCGTATGTGTTAAACCGAGAGAGCATTAATCGTATTGACGATAAATCACGCT
ATGAATTGGTGCGCTTGCAAAGCAGTTCTAAAGTGTGGCAACGCTTTGAGGACTTAATCAAAACGCAAAACAGCATTTAT
GCACAAAGCCATTTGGAAAGAGAAGTCCATATCGTCAATATTGCGATCTATCAGCAAGACAATAACCCCATTGCGAGCGT
CTCCATTGCGGCTAAACTCATGAACGAAAACAAGCTGGTGTATGAAAAGCGTTATAAAATCGTGCTGAGTTATTTGTTTG
ACACCCCGGATTTTGATTACGCTTCCATGCCTAAAAACCCTACCGGCTTTAAAGTCACTCGCTACAGCATCACTGAAATC
ACTAATAGGGGCGATTGA

Domains

Predicted by InterproScan.

VirB8 protein (VirB8)

(38-239)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB8 Helicobacter pylori P1

94.332

100

0.951