Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   AB2M35_RS09685 Genome accession   NZ_CP161902
Coordinates   1866716..1867147 (+) Length   143 a.a.
NCBI ID   WP_003231834.1    Uniprot ID   G4NVD0
Organism   Bacillus subtilis strain DYJ22     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1861716..1872147
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB2M35_RS09670 (AB2M35_09670) kbl 1862278..1863456 (+) 1179 WP_014479819.1 glycine C-acetyltransferase -
  AB2M35_RS09675 (AB2M35_09675) - 1863587..1864939 (-) 1353 WP_014478984.1 IS1182 family transposase -
  AB2M35_RS09680 (AB2M35_09680) miaB 1865185..1866714 (+) 1530 WP_014664026.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  AB2M35_RS09685 (AB2M35_09685) ymcA 1866716..1867147 (+) 432 WP_003231834.1 regulatory iron-sulfur-containing complex subunit RicA Regulator
  AB2M35_RS09690 (AB2M35_09690) cotE 1867409..1867954 (+) 546 WP_003231833.1 outer spore coat protein CotE -
  AB2M35_RS09695 (AB2M35_09695) hexA 1868087..1870663 (+) 2577 WP_046160418.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16166.27 Da        Isoelectric Point: 5.0437

>NTDB_id=919358 AB2M35_RS09685 WP_003231834.1 1866716..1867147(+) (ymcA) [Bacillus subtilis strain DYJ22]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENDKVSTIVNQIKALQKQAVNLKHYEKHEALKQVEAKIDALQE
ELEEIPVIQEFRDSQMEVNDLLQLVAHTISNQVTNEIITSTGGDLLKGETGSKVKHSNNSCSL

Nucleotide


Download         Length: 432 bp        

>NTDB_id=919358 AB2M35_RS09685 WP_003231834.1 1866716..1867147(+) (ymcA) [Bacillus subtilis strain DYJ22]
ATGACGCTCTACTCAAAAAAAGACATTGTGCAGCAGGCACGAAACCTTGCAAAAATGATTTCTGAAACAGAAGAGGTTGA
TTTTTTCAAACGGGCTGAAGCGCAAATCAATGAGAATGACAAAGTGTCCACAATCGTTAATCAGATTAAAGCCCTGCAAA
AACAGGCTGTCAATCTGAAGCATTATGAAAAGCATGAAGCGCTCAAACAAGTAGAAGCAAAAATTGACGCGCTGCAAGAA
GAGCTTGAAGAGATTCCTGTTATCCAGGAATTCAGAGACTCGCAGATGGAAGTAAATGACCTACTGCAGCTCGTTGCACA
CACCATTTCCAATCAAGTCACAAATGAAATCATCACATCAACCGGAGGCGACCTGCTGAAAGGGGAAACCGGTTCAAAGG
TGAAGCATTCAAATAACAGCTGTTCTCTCTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVD0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

100

100

1