Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   VA613_RS04235 Genome accession   NZ_CP141769
Coordinates   865046..865873 (-) Length   275 a.a.
NCBI ID   WP_324780615.1    Uniprot ID   -
Organism   Thiobacillus sedimenti strain SCUT-2     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 860046..870873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VA613_RS04215 (VA613_04215) sucC 860715..861875 (+) 1161 WP_324780611.1 ADP-forming succinate--CoA ligase subunit beta -
  VA613_RS04220 (VA613_04220) sucD 861872..862747 (+) 876 WP_324780612.1 succinate--CoA ligase subunit alpha -
  VA613_RS04225 (VA613_04225) - 862757..864364 (+) 1608 WP_324780613.1 NAD+ synthase -
  VA613_RS04230 (VA613_04230) - 864667..865005 (+) 339 WP_324780614.1 P-II family nitrogen regulator -
  VA613_RS04235 (VA613_04235) comL 865046..865873 (-) 828 WP_324780615.1 outer membrane protein assembly factor BamD Machinery gene
  VA613_RS04240 (VA613_04240) rluD 865872..866849 (+) 978 WP_324780616.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  VA613_RS04245 (VA613_04245) pgeF 866899..867570 (+) 672 WP_324780617.1 peptidoglycan editing factor PgeF -
  VA613_RS04250 (VA613_04250) - 867707..868111 (+) 405 WP_324780618.1 globin -
  VA613_RS04255 (VA613_04255) - 868145..868627 (-) 483 WP_324780619.1 GNAT family N-acetyltransferase -
  VA613_RS04260 (VA613_04260) nadC 868624..869466 (-) 843 WP_324780620.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 275 a.a.        Molecular weight: 30945.13 Da        Isoelectric Point: 7.8428

>NTDB_id=919302 VA613_RS04235 WP_324780615.1 865046..865873(-) (comL) [Thiobacillus sedimenti strain SCUT-2]
MLKQRLSGFTAYNRALGGVLLAAALSLGGCGLLPEVKDETAGWSAQRLYSEAKDNLNEGNYERAVKLFETLESRYPFGRY
AQQAQLEVAYAYYKDNEPISAVAACDRFIKLHPNHPNVDYAYYLKGLANFNDDLGLLGGLVDQDMSERDPKAAREAFLAF
KELVTRFPNSKYADDATARMKYLVNALAGNEVHVARYYLKRKAWVAAANRAKTVLTDYPEAPAVEEALGIMVVAYDNLHL
TTPRDDAKRVLELNYPNSTYLKGVSVKEKAWYRFW

Nucleotide


Download         Length: 828 bp        

>NTDB_id=919302 VA613_RS04235 WP_324780615.1 865046..865873(-) (comL) [Thiobacillus sedimenti strain SCUT-2]
ATGCTTAAGCAACGTCTATCCGGTTTCACTGCATACAATCGGGCGCTCGGCGGCGTGCTGCTCGCCGCGGCGCTGAGCCT
CGGCGGCTGCGGCCTGTTGCCCGAGGTCAAGGATGAAACCGCCGGCTGGTCGGCGCAGCGCCTCTATTCCGAAGCCAAGG
ACAACCTGAACGAAGGCAACTACGAGCGCGCCGTCAAGCTGTTCGAGACGCTGGAATCGCGCTATCCCTTCGGGCGCTAT
GCGCAGCAGGCACAGCTGGAAGTGGCCTATGCCTATTACAAGGACAACGAGCCCATCTCCGCCGTGGCCGCGTGCGACCG
CTTCATCAAGCTGCACCCTAATCACCCTAACGTCGATTATGCGTACTATCTGAAGGGCCTGGCGAATTTTAACGACGATC
TCGGGCTGCTGGGCGGCCTGGTCGATCAGGACATGAGCGAGCGCGACCCGAAGGCCGCACGCGAGGCCTTCCTCGCGTTC
AAGGAACTGGTGACGCGCTTCCCCAACAGCAAGTACGCGGACGATGCCACCGCCCGCATGAAGTATCTGGTCAACGCGCT
GGCCGGCAACGAAGTGCACGTCGCGCGCTACTACCTGAAGCGCAAGGCCTGGGTGGCTGCAGCCAACCGCGCCAAGACGG
TGTTGACCGATTACCCGGAAGCCCCGGCGGTGGAAGAAGCGCTCGGCATCATGGTGGTGGCCTACGACAACCTGCATCTG
ACCACGCCGCGCGACGATGCGAAACGGGTGCTCGAGCTGAATTATCCCAACAGCACGTATCTCAAGGGCGTCAGCGTCAA
GGAAAAGGCGTGGTACCGCTTCTGGTAG

Domains

Predicted by InterproScan.

Outer membrane lipoprotein (YfiO)

(45-249)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

52.632

96.727

0.509
  comL Neisseria gonorrhoeae MS11

51.88

96.727

0.502