Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCW38_RS02785 Genome accession   NZ_AP025480
Coordinates   571265..571870 (-) Length   201 a.a.
NCBI ID   WP_010435971.1    Uniprot ID   A0AAN0LMY6
Organism   Vibrio cyclitrophicus strain LMG 21359     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 566265..576870
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCW38_RS02775 aceF 567234..569120 (+) 1887 WP_261895011.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCW38_RS02780 lpdA 569363..570793 (+) 1431 WP_010435969.1 dihydrolipoyl dehydrogenase -
  OCW38_RS02785 opaR 571265..571870 (-) 606 WP_010435971.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCW38_RS02790 hpt 572208..572738 (+) 531 WP_010435974.1 hypoxanthine phosphoribosyltransferase -
  OCW38_RS02795 can 572825..573484 (-) 660 WP_010435977.1 carbonate dehydratase -
  OCW38_RS02800 - 573771..575402 (+) 1632 WP_016786429.1 SulP family inorganic anion transporter -
  OCW38_RS02805 - 575739..576656 (+) 918 WP_016768216.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23279.55 Da        Isoelectric Point: 6.2190

>NTDB_id=91919 OCW38_RS02785 WP_010435971.1 571265..571870(-) (opaR) [Vibrio cyclitrophicus strain LMG 21359]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAHDCHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLLQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTQEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=91919 OCW38_RS02785 WP_010435971.1 571265..571870(-) (opaR) [Vibrio cyclitrophicus strain LMG 21359]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCACTTGA
GGTATTCTCTCGCCGCGGCATTGGCCGTGGTGGGCACGCTGATATAGCTGACATTGCTCAGGTATCAGTTGCAACCGTGT
TTAACTACTTCCCAACCCGTGAAGATCTGGTTGATGAAGTACTTAACCACGTCGTTCGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTCGATATTCACGCAAAAGAGAACTTACATAATATTGCAACTGAAATGGTGACGTTGGTGGCTCACGA
TTGCCATTGGTTGAATGTATGGTTTGAATGGAGCGCATCAACCCGTGATGAAGTATGGCCTCTATTCGTAACCACAAACC
GCACTAACCAAATGTTACTACAAAACATGTTTAGCAAAGCGATAGAGCGTGGCGAAGTCTGTGACGACCACGACCCTAAG
CACCTTGCGAATCTGTTCCACGGCATTTGTTACTCGCTATTCATTCAAGCGAAGCGTGTAGATACGCAAGAAGAACTTTC
GACCTTGACGGATAGCTACTTAAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

74.372

99.005

0.736
  hapR Vibrio cholerae strain A1552

74.372

99.005

0.736

Multiple sequence alignment