Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   VNN51_RS04685 Genome accession   NZ_CP141727
Coordinates   929506..930753 (+) Length   415 a.a.
NCBI ID   WP_213433031.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M20011502 FF20a2     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 924506..935753
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN51_RS04655 (VNN51_04655) htrA 924545..925762 (-) 1218 WP_017369969.1 trypsin-like peptidase domain-containing protein Regulator
  VNN51_RS04660 (VNN51_04660) rlmH 926066..926545 (+) 480 WP_017369968.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  VNN51_RS04665 (VNN51_04665) - 926542..927189 (+) 648 WP_253009145.1 DNA alkylation repair protein -
  VNN51_RS04670 (VNN51_04670) yajC 927264..927596 (+) 333 WP_017369966.1 preprotein translocase subunit YajC -
  VNN51_RS04675 (VNN51_04675) - 927795..928532 (+) 738 WP_017369965.1 isoprenyl transferase -
  VNN51_RS04680 (VNN51_04680) - 928529..929323 (+) 795 WP_017369964.1 phosphatidate cytidylyltransferase -
  VNN51_RS04685 (VNN51_04685) eeP 929506..930753 (+) 1248 WP_213433031.1 RIP metalloprotease RseP Regulator
  VNN51_RS04690 (VNN51_04690) - 930780..932630 (+) 1851 WP_253009143.1 proline--tRNA ligase -

Sequence


Protein


Download         Length: 415 a.a.        Molecular weight: 45129.51 Da        Isoelectric Point: 5.5094

>NTDB_id=919041 VNN51_RS04685 WP_213433031.1 929506..930753(+) (eeP) [Lactococcus formosensis strain M20011502 FF20a2]
MIQTLVTFIIVFGIIVVVHEYGHLFFAKRAGILVREFSIGMGPKIFAHQAKDGTFYSIRILPLGGYVRMAGWGDDTTEIK
KGTPASLLIVENQVVKINLSERVTLENSVPMLVTEYDFEEALFIEGEVFGETKRYSVDHDATIIEADGTELRIAPRDVQY
QSASVLGKILTNFAGPLNNFILGIIAFIIITFMQGGVPSNTNQIGQVQSDTPAYSAGLQSKDKIQAVNGEKTNNWEEVVQ
RIGANDGSEIKLDIERAGATKTLELKPEKIDGRYRIGITQTIKTGFLDKLTGGFTQAANATTLIFKALGNLIAQPSLDKL
GGPVAIYDLSGQAAREGLLSVIALLAMLSINLGIVNLIPIPVLDGGKIVLNIVEALRGKPLSQEKEGILTLVGLVFMVVL
MIAVTWNDILRAFIR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=919041 VNN51_RS04685 WP_213433031.1 929506..930753(+) (eeP) [Lactococcus formosensis strain M20011502 FF20a2]
TTGATTCAAACATTGGTAACATTTATCATTGTCTTTGGTATTATTGTTGTTGTACATGAATATGGTCATCTATTCTTTGC
CAAGCGCGCGGGAATTTTAGTCCGTGAGTTTTCTATTGGAATGGGGCCTAAAATTTTTGCACACCAAGCCAAAGATGGTA
CATTTTATAGCATTCGGATACTTCCACTTGGGGGTTACGTCCGTATGGCTGGCTGGGGCGATGATACTACAGAAATAAAA
AAAGGAACCCCGGCATCTTTGCTGATTGTTGAAAATCAGGTGGTTAAAATTAATCTTTCTGAGCGGGTGACTTTGGAAAA
TAGTGTCCCCATGCTGGTCACTGAATACGATTTTGAAGAAGCACTTTTCATCGAAGGAGAAGTTTTTGGTGAAACAAAAC
GTTATTCAGTTGACCATGATGCAACAATTATCGAAGCGGATGGCACGGAACTTCGTATCGCTCCACGAGACGTACAATAT
CAAAGTGCCAGCGTTCTCGGCAAGATTTTAACAAATTTTGCTGGTCCTTTAAATAACTTTATTTTAGGGATTATAGCTTT
TATTATCATCACTTTTATGCAAGGTGGTGTACCTTCTAATACAAATCAAATCGGACAAGTCCAATCTGACACCCCTGCTT
ATTCGGCAGGTTTACAGTCAAAGGATAAGATTCAAGCAGTTAATGGTGAAAAAACCAATAACTGGGAAGAAGTTGTCCAA
AGGATCGGTGCAAATGATGGCAGTGAAATCAAGCTGGATATCGAACGTGCTGGTGCGACGAAGACACTGGAGCTCAAGCC
AGAAAAAATTGACGGAAGATACCGAATTGGTATCACTCAAACAATCAAAACAGGCTTTTTAGATAAGTTAACGGGAGGCT
TTACTCAGGCTGCTAACGCAACAACGTTGATATTTAAAGCTTTAGGTAACCTCATTGCACAGCCAAGTCTTGATAAACTT
GGTGGACCCGTTGCCATTTATGATTTAAGTGGGCAAGCAGCCCGAGAAGGTCTGCTGTCAGTTATTGCCTTACTTGCAAT
GCTCTCAATCAATCTGGGAATCGTAAATTTAATCCCAATCCCCGTCCTTGACGGAGGGAAAATTGTCCTCAATATTGTTG
AGGCCCTACGAGGCAAACCACTTTCACAAGAAAAAGAAGGAATCTTAACACTTGTTGGTCTTGTCTTTATGGTGGTCTTG
ATGATTGCTGTGACTTGGAATGATATCCTCCGAGCCTTTATTAGATAA

Domains


Predicted by InterproScan.

(203-266)

(7-400)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

55.847

100

0.564

  eeP Streptococcus thermophilus LMD-9

55.609

100

0.561