Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   VNN28_RS01555 Genome accession   NZ_CP141725
Coordinates   313315..313998 (-) Length   227 a.a.
NCBI ID   WP_165714337.1    Uniprot ID   -
Organism   Lactococcus formosensis strain M03102409 EE5d7     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 308315..318998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN28_RS01535 (VNN28_01535) - 308670..309881 (-) 1212 WP_338997740.1 cysteine desulfurase -
  VNN28_RS01540 (VNN28_01540) sufD 309881..311137 (-) 1257 WP_165713159.1 Fe-S cluster assembly protein SufD -
  VNN28_RS01545 (VNN28_01545) sufC 311207..311977 (-) 771 WP_017368843.1 Fe-S cluster assembly ATPase SufC -
  VNN28_RS01550 (VNN28_01550) - 312055..313311 (-) 1257 WP_096368631.1 MraY family glycosyltransferase -
  VNN28_RS01555 (VNN28_01555) mecA 313315..313998 (-) 684 WP_165714337.1 adaptor protein MecA Regulator
  VNN28_RS01560 (VNN28_01560) - 314246..315154 (+) 909 WP_096368633.1 diacylglycerol kinase family protein -
  VNN28_RS01565 (VNN28_01565) rpoC 315246..318893 (-) 3648 WP_017368839.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26211.34 Da        Isoelectric Point: 3.9817

>NTDB_id=918973 VNN28_RS01555 WP_165714337.1 313315..313998(-) (mecA) [Lactococcus formosensis strain M03102409 EE5d7]
MQYEEINEKTIKISLTFQDLVDHDVKLSDFFTNQSMVENLFYELVEELGLEERFSSGLLTFQIQPFPKGVNIIVTEENID
IDPNNLPDDPEEFEQLMTDFFGRVEDLKQNGGAMADTSTTETKETQVENKPDPDFVFYSLEFENMSQLLMAVKNVKIDAE
ESELYSYQDKFYLIILDNQKSKGKTAVSSMRARMLEYGQETANSRETLQEYGEILINTRALEVLSKI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=918973 VNN28_RS01555 WP_165714337.1 313315..313998(-) (mecA) [Lactococcus formosensis strain M03102409 EE5d7]
ATGCAATACGAAGAAATAAACGAAAAAACAATAAAGATTAGCCTAACCTTCCAAGATTTGGTTGATCATGATGTCAAACT
CTCTGATTTTTTTACGAACCAATCAATGGTGGAAAATCTTTTTTATGAGTTGGTAGAAGAGCTAGGACTTGAGGAACGGT
TCTCGTCAGGACTTTTAACCTTCCAAATTCAACCTTTCCCTAAAGGGGTGAATATTATTGTTACTGAAGAAAACATCGAT
ATTGATCCCAATAATCTTCCAGATGATCCTGAAGAATTTGAGCAGCTCATGACGGATTTCTTTGGACGTGTGGAAGATTT
AAAACAAAATGGCGGAGCAATGGCAGATACAAGTACAACTGAAACTAAAGAAACACAAGTAGAAAACAAACCAGACCCAG
ATTTTGTCTTCTATTCCCTAGAATTTGAAAATATGTCTCAACTATTGATGGCAGTAAAAAATGTTAAAATCGATGCAGAA
GAGTCTGAACTTTATAGCTATCAAGACAAGTTTTACTTGATTATTTTAGATAATCAAAAATCAAAAGGAAAGACAGCTGT
AAGTTCCATGCGTGCCCGAATGTTAGAGTACGGACAGGAAACGGCCAACAGTCGCGAAACACTACAAGAATATGGCGAGA
TATTGATCAACACTCGTGCTTTGGAAGTTCTCTCAAAAATTTAA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. cremoris KW2

53.814

100

0.559
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

53.814

100

0.559