Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   VNN48_RS08810 Genome accession   NZ_CP141723
Coordinates   1805371..1806054 (+) Length   227 a.a.
NCBI ID   WP_165714337.1    Uniprot ID   -
Organism   Lactococcus formosensis strain PAQ-208     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1800371..1811054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN48_RS08800 (VNN48_08795) rpoC 1800475..1804122 (+) 3648 WP_017368839.1 DNA-directed RNA polymerase subunit beta' -
  VNN48_RS08805 (VNN48_08800) - 1804215..1805123 (-) 909 WP_213432806.1 diacylglycerol kinase family protein -
  VNN48_RS08810 (VNN48_08805) mecA 1805371..1806054 (+) 684 WP_165714337.1 adaptor protein MecA Regulator
  VNN48_RS08815 (VNN48_08810) - 1806058..1807314 (+) 1257 WP_213432804.1 glycosyltransferase family 4 protein -
  VNN48_RS08820 (VNN48_08815) sufC 1807392..1808162 (+) 771 WP_017368843.1 Fe-S cluster assembly ATPase SufC -
  VNN48_RS08825 (VNN48_08820) sufD 1808233..1809489 (+) 1257 WP_253008132.1 Fe-S cluster assembly protein SufD -
  VNN48_RS08830 (VNN48_08825) - 1809489..1810700 (+) 1212 WP_407281150.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26211.34 Da        Isoelectric Point: 3.9817

>NTDB_id=918952 VNN48_RS08810 WP_165714337.1 1805371..1806054(+) (mecA) [Lactococcus formosensis strain PAQ-208]
MQYEEINEKTIKISLTFQDLVDHDVKLSDFFTNQSMVENLFYELVEELGLEERFSSGLLTFQIQPFPKGVNIIVTEENID
IDPNNLPDDPEEFEQLMTDFFGRVEDLKQNGGAMADTSTTETKETQVENKPDPDFVFYSLEFENMSQLLMAVKNVKIDAE
ESELYSYQDKFYLIILDNQKSKGKTAVSSMRARMLEYGQETANSRETLQEYGEILINTRALEVLSKI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=918952 VNN48_RS08810 WP_165714337.1 1805371..1806054(+) (mecA) [Lactococcus formosensis strain PAQ-208]
ATGCAATACGAAGAAATAAACGAAAAAACAATAAAGATTAGCCTAACCTTCCAAGATTTGGTTGATCATGATGTCAAACT
CTCTGATTTTTTTACGAACCAATCAATGGTGGAAAATCTTTTTTATGAGTTGGTAGAAGAGCTAGGACTTGAGGAACGGT
TCTCGTCGGGACTTTTAACCTTCCAAATTCAACCTTTCCCTAAAGGGGTGAATATTATTGTTACTGAAGAAAACATCGAT
ATTGATCCCAATAATCTTCCAGATGATCCTGAAGAATTTGAGCAGCTCATGACGGATTTCTTTGGACGTGTGGAAGATTT
AAAACAAAATGGCGGAGCAATGGCAGATACAAGTACAACTGAAACTAAAGAAACACAAGTAGAAAACAAACCAGACCCAG
ATTTTGTCTTCTATTCCCTAGAATTTGAAAATATGTCTCAACTTTTGATGGCAGTAAAAAATGTTAAAATCGATGCAGAA
GAGTCCGAACTTTATAGCTATCAAGACAAGTTTTACTTGATTATTTTGGATAATCAAAAATCAAAAGGAAAGACAGCTGT
AAGTTCCATGCGTGCCCGAATGTTAGAGTACGGACAGGAAACGGCCAACAGTCGCGAAACACTACAAGAATATGGCGAGA
TATTGATCAACACTCGTGCTTTGGAAGTTCTCTCAAAAATTTAA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. cremoris KW2

53.814

100

0.559
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

53.814

100

0.559