Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OC193_RS13165 Genome accession   NZ_AP025476
Coordinates   2968122..2969102 (-) Length   326 a.a.
NCBI ID   WP_017059027.1    Uniprot ID   A0A1E5FN76
Organism   Vibrio crassostreae strain LMG 22240     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2963122..2974102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS13150 recA 2963628..2964668 (-) 1041 WP_017056586.1 recombinase RecA Machinery gene
  OC193_RS13155 pncC 2964808..2965302 (-) 495 WP_048659431.1 nicotinamide-nucleotide amidase -
  OC193_RS13160 mutS 2965427..2967988 (+) 2562 WP_048664497.1 DNA mismatch repair protein MutS -
  OC193_RS13165 rpoS 2968122..2969102 (-) 981 WP_017059027.1 RNA polymerase sigma factor RpoS Regulator
  OC193_RS13170 nlpD 2969201..2970115 (-) 915 WP_048664496.1 murein hydrolase activator NlpD -
  OC193_RS13175 - 2970151..2970777 (-) 627 WP_019826319.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OC193_RS13180 surE 2970778..2971521 (-) 744 WP_048659389.1 5'/3'-nucleotidase SurE -
  OC193_RS13185 truD 2971599..2972645 (-) 1047 WP_048659390.1 tRNA pseudouridine(13) synthase TruD -
  OC193_RS13190 ispF 2972668..2973147 (-) 480 WP_004739053.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OC193_RS13195 ispD 2973150..2973851 (-) 702 WP_048664495.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37218.43 Da        Isoelectric Point: 5.1506

>NTDB_id=91882 OC193_RS13165 WP_017059027.1 2968122..2969102(-) (rpoS) [Vibrio crassostreae strain LMG 22240]
MSISNAVTKEEFDLDQATTEPEALGKAKRTVTKKTEAKEEVEVTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=91882 OC193_RS13165 WP_017059027.1 2968122..2969102(-) (rpoS) [Vibrio crassostreae strain LMG 22240]
ATGAGTATAAGCAATGCAGTAACCAAAGAAGAGTTCGATCTTGACCAAGCAACCACGGAACCGGAAGCTCTTGGAAAAGC
AAAACGAACAGTCACTAAGAAAACCGAAGCGAAAGAAGAAGTTGAAGTTACGTCTAAAAGCTTAGATGCCACTCAACTGT
ATCTAGGCGAAATCGGTTTCTCACCACTACTAACCGCAGAAGAAGAAGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGTAAACGCATGATCGAAAGTAACCTGCGTTTGGTGGTAAAAATTTCTCGTCGTTATAGCAACCGTGGTTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTAGAGAAATTTGACCCAGAGCGAGGCTTCC
GCTTTTCAACTTACGCAACATGGTGGATTCGTCAAACCATTGAACGTGCGTTGATGAATCAGACTCGCACTATCCGTTTG
CCAATCCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAACTATCACAAAAGCTTGACCACGAACCAAC
AGCTGAAGAGATCGCTTCTAAGCTAGATAAGCCGGTTGGTGATGTGAGCAAGATGCTTCGTCTAAACGAAAGAGTGAGTT
CTGTAGATACGCCAATTGGTGGTGACGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCAGATCCTGAG
GTTTCAACTCAAGATAGCGATATCAAGAACTCACTGATCTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTACT
TGCACGTCGATTTGGACTACTGGGTTATGAACCGTCAACGCTAGAAGAAGTTGGCCGTGAAATCAGCCTGACTCGTGAGC
GAGTTCGTCAAATCCAAGTTGAAGGTCTTCGTCGTCTACGTGAGATTTTGATCAAGCAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70, region 4 (Sigma70_r4)

(255-308)

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70 region 2 (Sigma70_r2)

(87-156)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5FN76

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

81.737

100

0.837

Multiple sequence alignment