Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OC193_RS12935 Genome accession   NZ_AP025476
Coordinates   2923710..2924315 (+) Length   201 a.a.
NCBI ID   WP_048664508.1    Uniprot ID   A0A2N7JXS8
Organism   Vibrio crassostreae strain LMG 22240     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2918710..2929315
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS12915 - 2918946..2919863 (-) 918 WP_048664510.1 ABC transporter ATP-binding protein -
  OC193_RS12920 - 2920180..2921811 (-) 1632 WP_184957558.1 SulP family inorganic anion transporter -
  OC193_RS12925 can 2922098..2922766 (+) 669 WP_048658190.1 carbonate dehydratase -
  OC193_RS12930 hpt 2922842..2923372 (-) 531 WP_017633235.1 hypoxanthine phosphoribosyltransferase -
  OC193_RS12935 opaR 2923710..2924315 (+) 606 WP_048664508.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OC193_RS12940 lpdA 2924514..2925944 (-) 1431 WP_048659365.1 dihydrolipoyl dehydrogenase -
  OC193_RS12945 aceF 2926187..2928079 (-) 1893 WP_048659366.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23209.44 Da        Isoelectric Point: 6.0748

>NTDB_id=91874 OC193_RS12935 WP_048664508.1 2923710..2924315(+) (opaR) [Vibrio crassostreae strain LMG 22240]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKENLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=91874 OC193_RS12935 WP_048664508.1 2923710..2924315(+) (opaR) [Vibrio crassostreae strain LMG 22240]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTCGCAACTGTAT
TTAATTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTACTAAATCACGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGACTTAGATATTCACGCAAAAGAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTAGCTCAAGA
CAGCCATTGGTTGAACGTATGGTTCGAATGGAGCGCATCAACTCGTGATGAAGTATGGCCTCTATTCGTAACCACTAACC
GCACTAACCAAATGTTAGTTCAGAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGACCCTAAA
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCGCTATTCATTCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTGACAGATAGCTACTTAAACATGCTGTGCATTTATAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N7JXS8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83

99.502

0.826
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment