Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OC193_RS10870 Genome accession   NZ_AP025476
Coordinates   2453862..2455250 (-) Length   462 a.a.
NCBI ID   WP_017632950.1    Uniprot ID   A0A4R2FNJ9
Organism   Vibrio crassostreae strain LMG 22240     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2448862..2460250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OC193_RS10835 moaE 2449127..2449582 (-) 456 WP_048662066.1 molybdopterin synthase catalytic subunit MoaE -
  OC193_RS10840 moaD 2449585..2449830 (-) 246 WP_048662065.1 molybdopterin synthase sulfur carrier subunit -
  OC193_RS10845 moaC 2449827..2450306 (-) 480 WP_017093480.1 cyclic pyranopterin monophosphate synthase MoaC -
  OC193_RS10850 moaB 2450319..2450831 (-) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  OC193_RS10855 moaA 2451188..2452177 (-) 990 WP_017632500.1 GTP 3',8-cyclase MoaA -
  OC193_RS10860 - 2452513..2453400 (+) 888 WP_048662064.1 YvcK family protein -
  OC193_RS10865 luxU 2453494..2453838 (-) 345 WP_017632949.1 quorum-sensing phosphorelay protein LuxU -
  OC193_RS10870 luxO 2453862..2455250 (-) 1389 WP_017632950.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OC193_RS10875 uvrB 2455580..2457610 (-) 2031 WP_048662063.1 excinuclease ABC subunit UvrB -
  OC193_RS10885 rsxA 2458562..2459140 (+) 579 WP_004734039.1 electron transport complex subunit RsxA -
  OC193_RS10890 rsxB 2459143..2459736 (+) 594 WP_004734040.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51735.28 Da        Isoelectric Point: 6.4047

>NTDB_id=91872 OC193_RS10870 WP_017632950.1 2453862..2455250(-) (luxO) [Vibrio crassostreae strain LMG 22240]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQSEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=91872 OC193_RS10870 WP_017632950.1 2453862..2455250(-) (luxO) [Vibrio crassostreae strain LMG 22240]
ATGCAATCAAAAACGTTAGATAACAAATCAAAGTATTTGTTGATGGTGGAGGATACGGCGTCAGTCGCAGCGTTATATCG
CTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTTGGCACTGGCCGCGATGCAATTGAGAGTTTGAATCATCGAA
TCCCTGACCTCATTTTATTAGATCTACGTCTGCCTGATATGACGGGCATGGACGTGCTCTTTGCTGTAAAACAAAAATAC
CCTGAAGTGCCCGTTATCTTTATGACAGCGCACGGTTCTATCGATACCGCCGTAGAAGCGATGCGTCATGGCTCTCAGGA
CTTCCTTATCAAGCCGTGTGAAGCCGACCGACTTCGTATTACGGTGAACAATGCGATCCGCAAAGCGACCAAGCTTAAGA
ACAGCTCTGAACATCCGGGAAACCAGAATTATCAAGGCTTCATTGGCAGTAGCCAAACCATGCAGCAGGTTTACCGAACT
ATCGATTCCGCCGCATCGAGTAAAGCGAGCATTTTCATTACCGGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCAGAAGC
GATTCACGCGGCGAGTAAGCGTGGCGATAAGCCTTTCATCGCAATCAACTGTGCAGCAATTCCTAAAGATTTGATTGAAA
GTGAGCTGTTTGGCCACGTTAAAGGTGCATTTACGGGCGCGGCTACGGATCGTCAAGGTGCAGCTGAATTGGCTGATGGA
GGCACACTGTTCCTCGATGAGCTGTGTGAGATGGATCTTGAACTGCAAACCAAGCTTCTACGTTTTATCCAAACGGGTAC
TTTTCAAAAGGTAGGCTCTTCGAAGATGAAGAGTGTGGACGTTCGTTTTGTTTGTGCGACTAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGACTTATACTACCGTTTGTACGTGATTCCTCTGCACTTGCCGCCATTGCGTGAA
CGTGGTGAAGATGTCATCGAGATTGCATACTCATTATTGGGCTACATGTCGGTTGAAGAAGGTAAGGCGTTTGTGCGTTT
TGCTCAAGAAGTGTTGGATCGCTTTAACCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTATTGCGAAATG
TGGTGGTATTGAATAATGGTAAAGAGATTACTCTGAACATGCTTCCGCCACCATTGAATCAACCGATTGAAAATAGCCTG
CGCCTGAAAGAGAAGCAGAGTGAAGACATCACAGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCAATCGA
ACAAGCCATAAAAGCGTGTGATGGCAACATCCCTCGCGCGGCTGGTTTCTTGGATGTCAGTCCATCAACGATATACCGTA
AATTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R2FNJ9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838

Multiple sequence alignment