Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   VNN47_RS09265 Genome accession   NZ_CP141709
Coordinates   1826442..1827125 (+) Length   227 a.a.
NCBI ID   WP_242803207.1    Uniprot ID   -
Organism   Lactococcus garvieae strain VC13     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1821442..1832125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN47_RS09255 (VNN47_09220) rpoC 1821526..1825173 (+) 3648 WP_004259228.1 DNA-directed RNA polymerase subunit beta' -
  VNN47_RS09260 (VNN47_09225) - 1825290..1826198 (-) 909 WP_165705977.1 diacylglycerol kinase family protein -
  VNN47_RS09265 (VNN47_09230) mecA 1826442..1827125 (+) 684 WP_242803207.1 adaptor protein MecA Regulator
  VNN47_RS09270 (VNN47_09235) - 1827129..1828385 (+) 1257 WP_407350288.1 glycosyltransferase family 4 protein -
  VNN47_RS09275 (VNN47_09240) sufC 1828463..1829233 (+) 771 WP_407350289.1 Fe-S cluster assembly ATPase SufC -
  VNN47_RS09280 (VNN47_09245) sufD 1829305..1830561 (+) 1257 WP_019299087.1 Fe-S cluster assembly protein SufD -
  VNN47_RS09285 (VNN47_09250) - 1830561..1831772 (+) 1212 WP_407350290.1 cysteine desulfurase -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26315.48 Da        Isoelectric Point: 4.0202

>NTDB_id=918682 VNN47_RS09265 WP_242803207.1 1826442..1827125(+) (mecA) [Lactococcus garvieae strain VC13]
MQYEEINEKTIKISLTFQDLVDHDVKLSDFFTNQSMVENLFYELVEELGLEERFSSGLLTFQIQPFPKGVNIIVTEENID
IDPNNLPDDPEEFEQLMTDFFGRVEDLKQNGGTMADTSTTETKETKVENKPDPDFVFYSLEFENMYQLLTAVKNVKIDAE
ESELYSYQDKFYLIILDNQKSKGKTAVSSMRARMLEYGQETVNSRETLQEYGEILINTRALEVLSKI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=918682 VNN47_RS09265 WP_242803207.1 1826442..1827125(+) (mecA) [Lactococcus garvieae strain VC13]
ATGCAATACGAAGAAATAAACGAAAAAACGATAAAGATTAGCCTAACCTTTCAAGATTTGGTTGATCATGATGTCAAACT
CTCTGATTTTTTTACTAACCAGTCGATGGTTGAAAATCTTTTTTATGAATTAGTAGAAGAGCTAGGACTTGAGGAAAGAT
TCTCATCAGGACTTTTAACTTTCCAAATTCAACCTTTCCCTAAAGGGGTGAATATCATTGTTACTGAGGAAAATATCGAT
ATTGATCCCAATAATCTCCCGGATGATCCTGAAGAATTTGAGCAGCTGATGACGGATTTCTTTGGGCGTGTGGAAGATTT
AAAACAAAATGGCGGAACAATGGCAGATACAAGTACAACTGAAACGAAAGAAACAAAAGTAGAAAATAAACCAGACCCAG
ATTTTGTCTTCTATTCTCTAGAATTTGAAAATATGTATCAACTTTTGACAGCGGTAAAAAATGTTAAAATTGATGCAGAA
GAGTCTGAACTTTACAGTTACCAAGATAAGTTTTATTTGATTATTTTGGACAATCAAAAATCAAAAGGAAAAACAGCCGT
AAGTTCGATGCGTGCCCGAATGTTAGAATATGGCCAGGAAACGGTCAACAGTCGTGAAACCCTACAAGAATACGGCGAGA
TACTAATCAATACGCGTGCTTTGGAAGTTCTCTCAAAAATTTAA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. cremoris KW2

54.077

100

0.555
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

54.077

100

0.555