Detailed information    

insolico Bioinformatically predicted

Overview

Name   mecA   Type   Regulator
Locus tag   VNN37_RS01760 Genome accession   NZ_CP141707
Coordinates   346654..347337 (-) Length   227 a.a.
NCBI ID   WP_311798602.1    Uniprot ID   -
Organism   Lactococcus garvieae strain M21102102     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 341654..352337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN37_RS01740 (VNN37_01740) - 342007..343218 (-) 1212 WP_339000404.1 cysteine desulfurase -
  VNN37_RS01745 (VNN37_01745) sufD 343218..344474 (-) 1257 WP_339000406.1 Fe-S cluster assembly protein SufD -
  VNN37_RS01750 (VNN37_01750) sufC 344546..345316 (-) 771 WP_014024332.1 Fe-S cluster assembly ATPase SufC -
  VNN37_RS01755 (VNN37_01755) - 345394..346650 (-) 1257 WP_339000408.1 MraY family glycosyltransferase -
  VNN37_RS01760 (VNN37_01760) mecA 346654..347337 (-) 684 WP_311798602.1 adaptor protein MecA Regulator
  VNN37_RS01765 (VNN37_01765) - 347581..348489 (+) 909 WP_165705977.1 diacylglycerol kinase family protein -
  VNN37_RS01770 (VNN37_01770) rpoC 348582..352229 (-) 3648 WP_004259228.1 DNA-directed RNA polymerase subunit beta' -

Sequence

Protein


Download         Length: 227 a.a.        Molecular weight: 26226.38 Da        Isoelectric Point: 4.0202

>NTDB_id=918613 VNN37_RS01760 WP_311798602.1 346654..347337(-) (mecA) [Lactococcus garvieae strain M21102102]
MQYEEINEKTIKISLTFQDLVDHDVKLSDFFTNQSMVENLFYELVEELGLEERFSSGLLTFQIQPFPKGVNIIVTEENID
IDPNNLPDDPEEFEQLMTDFFGRVEDLKQNGGTMADTSTTETKETKVETKPDPDFVFYSLEFENMSQLLTAVKNVKIDAE
ESELYSYQDKFYLIILDNQKSKGKTAVSSMRARMLEYGQETVNSRETLQEYGEILINTRALEVLSKI

Nucleotide


Download         Length: 684 bp        

>NTDB_id=918613 VNN37_RS01760 WP_311798602.1 346654..347337(-) (mecA) [Lactococcus garvieae strain M21102102]
ATGCAATACGAAGAAATAAACGAAAAAACGATAAAGATTAGCCTAACCTTTCAAGATTTGGTTGATCATGATGTCAAACT
CTCTGATTTTTTTACTAACCAGTCGATGGTTGAAAATCTTTTTTATGAATTAGTAGAAGAACTGGGACTTGAGGAAAGAT
TCTCATCAGGACTTTTAACTTTCCAAATTCAACCTTTCCCTAAAGGGGTGAATATCATTGTTACCGAGGAAAATATTGAT
ATTGATCCCAATAATCTCCCGGATGATCCTGAAGAATTTGAGCAGCTGATGACGGATTTCTTTGGGCGTGTGGAAGATTT
AAAACAAAATGGCGGAACAATGGCAGATACAAGTACAACTGAAACGAAAGAAACAAAAGTAGAAACTAAACCAGACCCAG
ATTTTGTCTTCTATTCTCTAGAATTTGAAAATATGTCTCAACTTTTGACAGCGGTAAAAAATGTTAAAATTGATGCAGAA
GAGTCTGAACTTTACAGTTACCAAGATAAGTTTTATTTGATTATTTTGGACAATCAAAAATCAAAAGGAAAAACAGCCGT
AAGTTCGATGCGTGCCCGAATGTTAGAATACGGCCAGGAAACGGTCAACAGTCGTGAAACCCTACAAGAATACGGCGAGA
TACTAATCAATACGCGTGCTTTGGAAGTTCTCTCAAAAATTTAA

Domains

Predicted by InterproScan.

Negative regulator of genetic competence (MecA) (MecA)

(1-224)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mecA Lactococcus lactis subsp. lactis strain DGCC12653

54.661

100

0.568
  mecA Lactococcus lactis subsp. cremoris KW2

54.077

100

0.555