Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV39_RS09865 Genome accession   NZ_AP025472
Coordinates   2094679..2096079 (-) Length   466 a.a.
NCBI ID   WP_113799964.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 2089679..2101079
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS09830 moaE 2090246..2090701 (-) 456 WP_113799971.1 molybdopterin synthase catalytic subunit MoaE -
  OCV39_RS09835 moaD 2090704..2090949 (-) 246 WP_113799968.1 molybdopterin synthase sulfur carrier subunit -
  OCV39_RS09840 moaC 2090946..2091425 (-) 480 WP_261888390.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV39_RS09845 moaB 2091460..2091972 (-) 513 WP_017051490.1 molybdenum cofactor biosynthesis protein B -
  OCV39_RS09850 moaA 2092059..2093048 (-) 990 WP_017051489.1 GTP 3',8-cyclase MoaA -
  OCV39_RS09855 - 2093381..2094268 (+) 888 WP_029203240.1 YvcK family protein -
  OCV39_RS09860 luxU 2094336..2094677 (-) 342 WP_017051487.1 quorum-sensing phosphorelay protein LuxU -
  OCV39_RS09865 luxO 2094679..2096079 (-) 1401 WP_113799964.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV39_RS09870 uvrB 2096357..2098387 (-) 2031 WP_261888391.1 excinuclease ABC subunit UvrB -
  OCV39_RS09880 rsxA 2099177..2099758 (+) 582 WP_017051484.1 electron transport complex subunit RsxA -
  OCV39_RS09885 rsxB 2099758..2100354 (+) 597 WP_113799960.1 electron transport complex subunit RsxB -

Sequence

Protein


Download         Length: 466 a.a.        Molecular weight: 52263.66 Da        Isoelectric Point: 6.3216

>NTDB_id=91842 OCV39_RS09865 WP_113799964.1 2094679..2096079(-) (luxO) [Vibrio cortegadensis strain CECT 7227]
MQQTPETQKSKYLLMVEDTASVAALYRSYLTPLGIDINIVGTGRDAINSLNHRTPDLILLDLRLPDMTGMDVLFAVKQSY
PDVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRVTVNNAIRKATKLKNESENPHNQNYQGFIGSSQTMQAVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLDLQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGFMSFEEGKGFVRFAPEVLDRFNQYEWPGNVRQLQNVLRNVVVLNHGKEITLNMLPPPLNRPIENQM
SLEKKRREEISVQDIFPLWLTEKTAIEQAIKACDGNIPRAAGYLDVSPSTLYRKLQNWNNKEQQST

Nucleotide


Download         Length: 1401 bp        

>NTDB_id=91842 OCV39_RS09865 WP_113799964.1 2094679..2096079(-) (luxO) [Vibrio cortegadensis strain CECT 7227]
ATGCAACAAACTCCCGAAACTCAGAAATCTAAGTATTTACTGATGGTCGAAGATACGGCCTCCGTTGCGGCGCTGTATCG
CTCTTATCTAACCCCTTTGGGTATTGATATTAATATTGTTGGCACTGGGCGAGATGCTATCAATAGTTTAAACCACCGCA
CGCCTGATCTTATTCTACTCGATTTACGTTTACCCGATATGACAGGTATGGACGTACTCTTCGCAGTGAAACAATCTTAT
CCTGATGTTCCGGTTATTTTTATGACTGCACATGGTTCAATTGATACTGCTGTTGAAGCGATGCGCCATGGGTCTCAAGA
CTTTTTAATTAAACCTTGTGAGGCGGATCGGTTAAGAGTCACCGTTAATAATGCGATTCGTAAAGCGACGAAATTAAAGA
ACGAATCGGAAAACCCTCATAATCAAAATTACCAAGGTTTTATCGGCAGTAGCCAAACAATGCAGGCGGTATACCGCACC
ATTGATTCCGCCGCTAGCAGTAAAGCCAGTATTTTCATCACAGGTGAAAGTGGTACGGGTAAAGAGGTGTGTGCAGAAGC
GATTCATGCCGCAAGCAAACGTGGTGATAAACCATTCATTGCGATTAACTGTGCTGCGATACCTAAAGATTTGATTGAAA
GTGAACTGTTTGGGCATGTTAAAGGTGCATTTACTGGCGCGGCAACTGATCGACAAGGTGCGGCGGAGCTAGCCGATGGT
GGAACGCTTTTTCTCGATGAATTGTGCGAGATGGATTTGGATCTTCAAACCAAATTATTACGCTTTATTCAGACAGGCAC
TTTCCAGAAAGTAGGTTCGTCTAAGATGAAGAGTGTGGATGTACGTTTTGTATGTGCCACCAACCGAGATCCTTGGAAAG
AAGTTCAAGAAGGCCGCTTCAGAGAAGATTTATACTATCGTCTGTATGTTATTCCGCTTCATCTGCCACCACTGCGTGAA
AGAGGGGAGGATGTCATTGAAATTGCCTACTCATTGCTTGGTTTTATGTCTTTCGAAGAGGGTAAAGGCTTTGTTCGCTT
CGCGCCTGAGGTTCTCGACCGATTTAATCAATATGAATGGCCAGGAAATGTACGTCAGCTACAGAATGTTCTGAGAAACG
TGGTGGTTCTTAATCATGGTAAAGAGATCACTCTCAATATGTTGCCTCCGCCACTTAATCGCCCGATTGAAAATCAGATG
TCACTAGAGAAAAAACGCCGAGAAGAGATCTCCGTACAGGATATTTTTCCATTATGGTTGACGGAAAAAACAGCGATTGA
GCAAGCGATTAAAGCGTGTGATGGCAATATTCCAAGAGCGGCAGGCTATTTGGATGTGAGTCCTTCTACACTTTATCGGA
AGCTTCAGAATTGGAATAATAAAGAGCAGCAAAGTACTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-457)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.83

96.137

0.835

Multiple sequence alignment