Detailed information    

insolico Bioinformatically predicted

Overview


Name   eeP   Type   Regulator
Locus tag   VNN38_RS04315 Genome accession   NZ_CP141697
Coordinates   869021..870268 (+) Length   415 a.a.
NCBI ID   WP_019292980.1    Uniprot ID   -
Organism   Lactococcus petauri strain R21-77-2     
Function   processing of ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 864021..875268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN38_RS04285 (VNN38_04285) htrA 864062..865279 (-) 1218 WP_019291567.1 trypsin-like peptidase domain-containing protein Regulator
  VNN38_RS04290 (VNN38_04290) rlmH 865583..866062 (+) 480 WP_019291566.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  VNN38_RS04295 (VNN38_04295) - 866059..866706 (+) 648 WP_019292983.1 DNA alkylation repair protein -
  VNN38_RS04300 (VNN38_04300) yajC 866781..867116 (+) 336 WP_019292982.1 preprotein translocase subunit YajC -
  VNN38_RS04305 (VNN38_04305) - 867316..868053 (+) 738 WP_019292981.1 isoprenyl transferase -
  VNN38_RS04310 (VNN38_04310) - 868050..868844 (+) 795 WP_019291563.1 phosphatidate cytidylyltransferase -
  VNN38_RS04315 (VNN38_04315) eeP 869021..870268 (+) 1248 WP_019292980.1 RIP metalloprotease RseP Regulator
  VNN38_RS04320 (VNN38_04320) - 870295..872145 (+) 1851 WP_019292979.1 proline--tRNA ligase -
  VNN38_RS04325 (VNN38_04325) - 872613..872987 (+) 375 WP_019292978.1 hypothetical protein -

Sequence


Protein


Download         Length: 415 a.a.        Molecular weight: 45088.57 Da        Isoelectric Point: 6.5158

>NTDB_id=918366 VNN38_RS04315 WP_019292980.1 869021..870268(+) (eeP) [Lactococcus petauri strain R21-77-2]
MIQTLVTFIIVFGIIVVVHEYGHLFFAKRAGILVREFSIGMGPKIFAHQAKDGTFYSIRILPLGGYVRMAGWGDDTTEIK
KGTPASLMIVENQVVKINLSERVTLENSVPMLVTEYDFEKALFIEGEVFGETKRYSVDHDATIIEADGTELRIAPRDVQY
QSASVLGKILTNFAGPLNNFILGIIAFIIITFMQGGVPSNTNQIGQVQSGTPAYSAGLQSKDKIQAVNGEKTNNWEEVVQ
RIGANDGSEIKLDIERAGATKTLELKPEKIDGRYRIGITQTIKTGFLDKLTGGFTQAANATTLIFKALGNLIAQPSLDKL
GGPVAIYDLSGQAAREGLLSVIALLAMLSINLGIVNLIPIPVLDGGKIVLNIVEALRGKPLSQEKEGILTLVGLVFMVVL
MIAVTWNDILRAFIR

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=918366 VNN38_RS04315 WP_019292980.1 869021..870268(+) (eeP) [Lactococcus petauri strain R21-77-2]
TTGATTCAAACATTGGTAACATTTATCATTGTCTTTGGTATTATTGTTGTTGTACATGAGTATGGTCATCTGTTCTTTGC
TAAGCGCGCGGGGATTTTAGTCCGCGAGTTTTCCATTGGAATGGGCCCCAAAATTTTTGCACATCAAGCCAAAGATGGTA
CGTTTTATAGCATTCGTATACTTCCTCTTGGAGGTTATGTCCGCATGGCGGGCTGGGGCGATGATACAACGGAAATAAAA
AAAGGAACCCCGGCATCTTTGATGATTGTTGAAAATCAGGTGGTTAAAATTAATCTTTCTGAGCGGGTGACTTTGGAAAA
TAGTGTCCCCATGCTGGTCACTGAATACGATTTTGAAAAAGCACTTTTCATCGAAGGAGAAGTTTTTGGTGAAACAAAAC
GTTATTCAGTTGACCATGATGCAACAATTATCGAAGCGGATGGCACGGAACTTCGTATCGCTCCACGAGACGTACAATAT
CAAAGTGCCAGCGTTCTCGGCAAGATTTTAACAAATTTTGCTGGTCCTTTAAATAACTTTATTTTAGGGATTATAGCTTT
TATTATCATCACTTTTATGCAAGGTGGTGTACCTTCTAATACAAATCAAATCGGACAAGTCCAATCTGGCACCCCTGCTT
ATTCGGCAGGTTTACAGTCAAAGGATAAAATCCAAGCAGTCAATGGTGAAAAAACCAATAACTGGGAAGAAGTTGTCCAA
AGGATTGGTGCAAATGATGGCAGTGAAATCAAGCTGGATATCGAACGTGCAGGTGCGACGAAGACACTGGAGCTCAAGCC
AGAAAAAATTGACGGAAGATACCGCATTGGTATCACTCAAACAATCAAAACAGGCTTTTTAGATAAGCTAACGGGTGGCT
TTACTCAGGCTGCTAATGCAACAACGCTTATTTTTAAAGCTTTAGGTAACCTCATTGCACAGCCAAGTCTTGATAAACTT
GGTGGACCCGTTGCCATTTATGATTTAAGTGGGCAAGCAGCCCGAGAAGGCCTATTATCTGTTATCGCTTTACTTGCCAT
GCTCTCAATTAATCTGGGAATCGTAAATTTAATCCCAATCCCCGTCCTTGACGGAGGGAAAATTGTCCTCAATATTGTTG
AGGCCCTACGAGGCAAACCACTTTCACAAGAAAAAGAAGGAATTTTAACACTTGTTGGTCTTGTCTTTATGGTGGTCTTG
ATGATTGCTGTGACTTGGAATGATATCCTCCGAGCCTTTATTAGATAA

Domains


Predicted by InterproScan.

(204-256)

(7-400)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  eeP Streptococcus thermophilus LMG 18311

56.086

100

0.566

  eeP Streptococcus thermophilus LMD-9

55.847

100

0.564