Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   ABZO29_RS02595 Genome accession   NZ_CP160403
Coordinates   529574..530245 (+) Length   223 a.a.
NCBI ID   WP_367318476.1    Uniprot ID   -
Organism   Streptomyces sp. HUAS ZL42     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 524574..535245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABZO29_RS02580 (ABZO29_02580) - 524990..526258 (-) 1269 WP_367318473.1 aspartate aminotransferase family protein -
  ABZO29_RS02585 (ABZO29_02585) - 526505..528130 (+) 1626 WP_367318474.1 PucR family transcriptional regulator -
  ABZO29_RS02590 (ABZO29_02590) - 528417..529577 (+) 1161 WP_367318475.1 sensor histidine kinase -
  ABZO29_RS02595 (ABZO29_02595) vraR 529574..530245 (+) 672 WP_367318476.1 response regulator Regulator
  ABZO29_RS02600 (ABZO29_02600) - 530601..532796 (+) 2196 WP_367318477.1 MMPL family transporter -
  ABZO29_RS02605 (ABZO29_02605) - 532911..534107 (-) 1197 WP_367318478.1 MFS transporter -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 24120.57 Da        Isoelectric Point: 4.5636

>NTDB_id=918319 ABZO29_RS02595 WP_367318476.1 529574..530245(+) (vraR) [Streptomyces sp. HUAS ZL42]
MIRVLLADDQRLVRAGFRSILEDEDDIEVVGEAADGQAAVAACRELRPDVVLMDIRMPGTDGLDAARLIAADEQLASVRV
VILTTFDLDEYVYGALRAGAAGFLVKDTEPEELAQAVRVAARGDALISPSVTRRLIAEFAGRLPGPTPDDARLDALTERE
REVMRLVAAGCNNDEIAQRLVLAPSTAKTHVSRIMTKLGARDRSQVVVLAYESGMVSPGRLER

Nucleotide


Download         Length: 672 bp        

>NTDB_id=918319 ABZO29_RS02595 WP_367318476.1 529574..530245(+) (vraR) [Streptomyces sp. HUAS ZL42]
ATGATCAGGGTTCTGCTGGCGGATGACCAGCGGCTGGTGAGGGCCGGGTTCCGGTCGATCCTTGAAGACGAGGACGACAT
CGAGGTGGTGGGCGAGGCCGCGGACGGGCAGGCCGCGGTCGCGGCCTGCCGCGAACTGCGGCCCGACGTGGTCCTGATGG
ATATCCGGATGCCGGGGACGGACGGCCTGGATGCCGCCCGGCTGATCGCGGCGGACGAGCAGTTGGCGTCGGTGAGGGTG
GTCATCCTGACGACCTTCGATCTGGACGAGTATGTGTACGGGGCGCTGCGCGCGGGGGCGGCGGGCTTTCTGGTGAAGGA
CACGGAGCCGGAGGAACTGGCGCAGGCGGTGCGGGTGGCCGCCCGGGGCGATGCGCTGATCAGCCCGTCGGTCACCAGAC
GGCTCATCGCCGAGTTCGCGGGCCGGCTGCCGGGCCCGACGCCGGATGACGCCCGGCTCGATGCCCTCACCGAACGGGAG
CGCGAGGTCATGCGGCTGGTGGCCGCGGGATGCAACAACGACGAGATCGCACAACGGCTGGTGCTGGCACCGTCGACAGC
GAAGACACATGTCAGCCGGATCATGACGAAGCTGGGGGCGCGGGACAGGTCGCAGGTCGTGGTGTTGGCGTACGAATCCG
GAATGGTCAGCCCGGGCCGGCTGGAGCGGTAG

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(155-210)

Response regulator receiver domain (Response_reg)

(4-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

39.815

96.861

0.386
  degU Bacillus subtilis subsp. subtilis str. 168

36.889

100

0.372