Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV39_RS02570 Genome accession   NZ_AP025472
Coordinates   526559..527176 (-) Length   205 a.a.
NCBI ID   WP_017054160.1    Uniprot ID   A0A1E5CZ30
Organism   Vibrio cortegadensis strain CECT 7227     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 521559..532176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS02560 aceF 522714..524615 (+) 1902 WP_261888867.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCV39_RS02565 lpdA 524863..526290 (+) 1428 WP_017054161.1 dihydrolipoyl dehydrogenase -
  OCV39_RS02570 opaR 526559..527176 (-) 618 WP_017054160.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV39_RS02575 hpt 527470..528000 (+) 531 WP_113799309.1 hypoxanthine phosphoribosyltransferase -
  OCV39_RS02580 can 528067..528741 (-) 675 WP_113799251.1 carbonate dehydratase -
  OCV39_RS02585 - 528979..530634 (+) 1656 WP_261888868.1 SulP family inorganic anion transporter -
  OCV39_RS02590 - 530844..531761 (+) 918 WP_113799249.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 205 a.a.        Molecular weight: 23788.07 Da        Isoelectric Point: 6.2206

>NTDB_id=91831 OCV39_RS02570 WP_017054160.1 526559..527176(-) (opaR) [Vibrio cortegadensis strain CECT 7227]
MDSIAKRPRTRLSPQRRKHQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DTIDLDLHAKENLHNITSEMVSLVINDCYWLKVWFEWSASTRDEVWPLFVTTNRTSQLLVQNMFAKAIERGEVCDQHEPE
HLANLFHGVCYSLFVQANRNPDLESIQALLTSYLDMLCIYKRENH

Nucleotide


Download         Length: 618 bp        

>NTDB_id=91831 OCV39_RS02570 WP_017054160.1 526559..527176(-) (opaR) [Vibrio cortegadensis strain CECT 7227]
ATGGACTCAATAGCTAAGAGACCAAGAACAAGGCTTTCTCCTCAACGACGCAAACATCAGCTGATGGAAATTGCGTTAGA
AGTATTCGCTCGTCGTGGCATAGGACGTGGTGGTCATGCAGATATTGCAGAAATCGCCCAAGTCTCTGTTGCCACTGTAT
TTAACTACTTCCCGACTAGAGAAGATTTAGTCGATGAAGTGTTAAACCATGTGGTTCGTCAATTCTCGAACTTCCTATCT
GACACCATCGATCTCGATCTACACGCAAAAGAAAACTTGCATAACATCACCTCTGAAATGGTGAGTTTAGTGATCAATGA
TTGCTACTGGTTAAAAGTGTGGTTTGAATGGAGCGCATCAACACGTGACGAAGTATGGCCTCTGTTTGTTACAACAAATA
GAACCAGCCAACTGCTCGTTCAAAATATGTTTGCTAAAGCGATAGAGCGTGGCGAAGTCTGTGATCAACATGAGCCAGAG
CATTTGGCTAATTTGTTCCACGGCGTATGCTACTCGCTATTTGTGCAAGCGAATCGAAACCCAGACCTAGAGAGCATACA
AGCCTTGCTTACGAGCTATCTAGACATGTTATGTATTTACAAGCGTGAAAATCACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5CZ30

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

83.251

99.024

0.824
  hapR Vibrio cholerae C6706

73.367

97.073

0.712
  hapR Vibrio cholerae strain A1552

73.367

97.073

0.712

Multiple sequence alignment