Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   ABXJ52_RS20575 Genome accession   NZ_CP160402
Coordinates   4535345..4536754 (-) Length   469 a.a.
NCBI ID   WP_367044076.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4530345..4541754
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS20555 (ABXJ52_20555) - 4531765..4532418 (+) 654 WP_367044073.1 response regulator transcription factor -
  ABXJ52_RS20560 (ABXJ52_20560) - 4532422..4533078 (-) 657 WP_367044074.1 phosphatase PAP2 family protein -
  ABXJ52_RS20565 (ABXJ52_20565) - 4533264..4534082 (+) 819 WP_367044075.1 hypothetical protein -
  ABXJ52_RS20570 (ABXJ52_20570) disA 4534140..4535264 (-) 1125 WP_249588570.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  ABXJ52_RS20575 (ABXJ52_20575) radA/sms 4535345..4536754 (-) 1410 WP_367044076.1 DNA repair protein RadA Machinery gene
  ABXJ52_RS20580 (ABXJ52_20580) - 4536932..4538641 (+) 1710 WP_367044077.1 hypothetical protein -
  ABXJ52_RS20585 (ABXJ52_20585) - 4538722..4539555 (-) 834 WP_367044078.1 hypothetical protein -
  ABXJ52_RS20590 (ABXJ52_20590) - 4539627..4540565 (+) 939 WP_367044080.1 Ppx/GppA phosphatase family protein -
  ABXJ52_RS20595 (ABXJ52_20595) - 4540663..4541487 (+) 825 WP_367044081.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 49772.88 Da        Isoelectric Point: 8.0102

>NTDB_id=918281 ABXJ52_RS20575 WP_367044076.1 4535345..4536754(-) (radA/sms) [Streptomyces sp. Je 1-332]
MATRTKSGKDRPSYRCTECGWQTAKWLGRCPECQAWGTVEEYGAPAVRTTAPGRVTSSALPIGEVDGRQATARTTGVAEF
DRVLGGGLVPGAVALLAGEPGVGKSTLLLDVAAKSASEEHRTLYVTGEESASQVRLRADRIKAIHDHLYLAAETDLAAVL
GHLDAVKPSLLILDSVQTIASPEIDGAPGGVAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVVLSF
EGDRHARLRLVRGVKNRYGTTDEVGCFELHDEGITGLTDPSGLFLTRRTEPVPGTCLTVTLEGRRPLVAEVQALTVDSQI
PSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLSEPAADLAIALALASAASDTPLPKNLVAIGEVGL
AGEVRRVTGVQRRLAEAHRLGFTHALVPADPGKVPPGMKVTEVADMGDALRVLPRSRRREAPREDEERR

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=918281 ABXJ52_RS20575 WP_367044076.1 4535345..4536754(-) (radA/sms) [Streptomyces sp. Je 1-332]
ATGGCCACCCGTACGAAGTCCGGCAAAGACCGGCCGTCCTATCGCTGCACCGAGTGCGGCTGGCAGACGGCCAAGTGGCT
CGGCCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTCGAGGAGTACGGCGCGCCCGCCGTCCGCACCACCGCCCCTGGCC
GCGTCACCTCCTCCGCCCTGCCCATCGGCGAGGTCGACGGCCGCCAGGCCACCGCTCGCACCACCGGAGTCGCCGAGTTC
GACCGCGTCCTCGGCGGCGGCCTCGTCCCCGGCGCCGTGGCGCTGCTCGCGGGCGAGCCGGGCGTCGGCAAGTCGACGCT
GCTCCTGGACGTCGCCGCGAAGTCGGCGAGCGAGGAACACCGCACGCTCTATGTCACCGGCGAGGAGTCCGCGAGCCAGG
TCCGGCTGCGCGCCGACCGCATCAAGGCGATCCACGACCACCTCTATCTGGCGGCGGAGACCGATCTCGCCGCCGTTCTG
GGCCACTTGGACGCGGTGAAGCCGTCCCTCCTGATCCTCGACTCGGTCCAGACGATCGCCTCCCCGGAGATCGACGGGGC
GCCGGGCGGCGTGGCGCAGGTCCGTGAGGTGGCGGGCGCGCTGATCCGCGCCTCCAAGGAGCGCGGCATGGCCACGCTCC
TGGTCGGCCATGTCACCAAGGACGGCGCCATCGCGGGCCCCCGCCTCCTTGAGCACCTCGTGGACGTCGTCCTGTCCTTC
GAGGGCGACCGGCACGCGCGCCTGCGCCTCGTCCGCGGCGTCAAGAACCGGTACGGGACGACGGACGAGGTCGGCTGCTT
CGAACTGCACGACGAGGGCATCACCGGCCTCACCGACCCCAGCGGTCTCTTCCTCACCCGCCGCACGGAGCCCGTCCCCG
GCACCTGTCTGACGGTCACGCTCGAAGGCCGCCGCCCCCTGGTGGCCGAGGTCCAGGCGCTCACCGTCGACTCCCAGATC
CCCTCCCCGCGGCGTACGACGTCCGGGCTCGAAACCTCCCGCGTCTCGATGATGCTGGCGGTCCTCGAGCAGCGGGGCCG
CATCACCGCGCTCGGCAAGCGCGACATCTACAGCGCGACGGTCGGCGGCGTGAAGCTCTCCGAGCCGGCCGCGGACCTGG
CGATCGCCCTCGCCCTGGCCAGCGCGGCGAGCGACACCCCGCTGCCGAAAAATCTCGTCGCGATCGGCGAAGTGGGCCTC
GCGGGCGAGGTCAGACGGGTCACGGGAGTCCAGCGCAGGCTGGCCGAAGCACACCGTCTCGGCTTCACGCACGCCCTCGT
CCCGGCCGACCCCGGCAAGGTCCCGCCCGGTATGAAGGTCACCGAAGTCGCCGACATGGGGGACGCGCTGCGTGTCCTTC
CGAGATCGCGTCGCAGAGAGGCCCCACGGGAGGACGAAGAGCGCCGGTAG

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(369-429)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(14-41)

AAA domain (AAA_25)

(85-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

43.584

96.375

0.42
  radA Streptococcus mitis NCTC 12261

43.653

95.736

0.418
  radA Streptococcus mitis SK321

44.573

92.324

0.412
  radA Streptococcus pneumoniae TIGR4

44.706

90.618

0.405
  radA Streptococcus pneumoniae Rx1

44.706

90.618

0.405
  radA Streptococcus pneumoniae D39

44.706

90.618

0.405
  radA Streptococcus pneumoniae R6

44.706

90.618

0.405