Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   VNN42_RS07955 Genome accession   NZ_CP141691
Coordinates   1599861..1600250 (+) Length   129 a.a.
NCBI ID   WP_019291355.1    Uniprot ID   A0A252CCZ8
Organism   Lactococcus petauri strain UCD-BR1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1594861..1605250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VNN42_RS07920 (VNN42_07920) - 1595579..1596088 (+) 510 WP_206888202.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  VNN42_RS07925 (VNN42_07925) - 1596078..1596482 (+) 405 WP_165720037.1 MGMT family protein -
  VNN42_RS07930 (VNN42_07930) - 1596499..1597182 (-) 684 WP_206888205.1 phosphatase PAP2 family protein -
  VNN42_RS07935 (VNN42_07935) pepA 1597294..1598361 (-) 1068 WP_206888208.1 glutamyl aminopeptidase -
  VNN42_RS07940 (VNN42_07940) - 1598562..1598849 (+) 288 WP_206888211.1 hypothetical protein -
  VNN42_RS07945 (VNN42_07945) - 1598846..1599166 (+) 321 WP_165716501.1 thioredoxin family protein -
  VNN42_RS07950 (VNN42_07950) ytpR 1599168..1599791 (+) 624 WP_206888214.1 YtpR family tRNA-binding protein -
  VNN42_RS07955 (VNN42_07955) ssbB 1599861..1600250 (+) 390 WP_019291355.1 single-stranded DNA-binding protein Machinery gene
  VNN42_RS07960 (VNN42_07960) - 1600307..1600837 (+) 531 WP_206888217.1 ClbS/DfsB family four-helix bundle protein -
  VNN42_RS07965 (VNN42_07965) groES 1600955..1601236 (+) 282 WP_061413785.1 co-chaperone GroES -
  VNN42_RS07970 (VNN42_07970) groL 1601265..1602890 (+) 1626 WP_003133890.1 chaperonin GroEL -
  VNN42_RS07975 (VNN42_07975) - 1602940..1603752 (-) 813 WP_165716504.1 MBL fold metallo-hydrolase -
  VNN42_RS07980 (VNN42_07980) - 1603749..1605167 (-) 1419 WP_206888223.1 ATP-binding protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14707.85 Da        Isoelectric Point: 9.3830

>NTDB_id=918274 VNN42_RS07955 WP_019291355.1 1599861..1600250(+) (ssbB) [Lactococcus petauri strain UCD-BR1]
MNKTLLVGRLVADPELTKTSNGKSLLRINLAVKRRYKNASGEKDTDFVALVFWEKQAEHCTSYAKKGALLAVEGEIRTRN
YVDKQEQKRYVTEVLVKTFDLLESRATVAMRQDSIENSALNLKEDELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=918274 VNN42_RS07955 WP_019291355.1 1599861..1600250(+) (ssbB) [Lactococcus petauri strain UCD-BR1]
ATGAATAAAACGTTACTTGTTGGCCGACTCGTTGCAGATCCAGAACTCACTAAAACATCTAATGGGAAAAGCCTATTGAG
AATAAATCTTGCTGTCAAACGACGCTATAAAAATGCTTCAGGTGAAAAAGATACAGACTTTGTCGCTTTGGTCTTTTGGG
AGAAACAGGCGGAACACTGTACATCCTATGCTAAAAAAGGTGCCCTACTTGCTGTAGAAGGGGAGATACGAACCAGGAAT
TATGTGGACAAGCAGGAACAAAAACGCTATGTGACAGAAGTGTTGGTGAAAACTTTTGACCTTTTGGAAAGTCGCGCGAC
AGTTGCCATGCGACAAGATTCTATAGAAAATAGTGCTCTTAATTTAAAAGAAGACGAATTACCGTTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A252CCZ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

57.364

100

0.574
  ssbB/cilA Streptococcus pneumoniae TIGR4

52.308

100

0.527
  ssbB/cilA Streptococcus mitis NCTC 12261

52.308

100

0.527
  ssbB/cilA Streptococcus pneumoniae R6

51.538

100

0.519
  ssbA Streptococcus mutans UA159

51.538

100

0.519
  ssbB/cilA Streptococcus mitis SK321

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae D39

51.538

100

0.519
  ssbB Streptococcus sobrinus strain NIDR 6715-7

51.538

100

0.519
  ssbB/cilA Streptococcus pneumoniae Rx1

51.538

100

0.519
  ssb Latilactobacillus sakei subsp. sakei 23K

45.536

86.822

0.395