Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ABXJ52_RS19535 Genome accession   NZ_CP160402
Coordinates   4314760..4315359 (+) Length   199 a.a.
NCBI ID   WP_367043882.1    Uniprot ID   -
Organism   Streptomyces sp. Je 1-332     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4309760..4320359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ABXJ52_RS19515 (ABXJ52_19515) - 4311899..4312549 (+) 651 WP_367043879.1 hypothetical protein -
  ABXJ52_RS19520 (ABXJ52_19520) - 4312594..4313166 (+) 573 WP_367049131.1 class I SAM-dependent methyltransferase -
  ABXJ52_RS19525 (ABXJ52_19525) - 4313193..4313999 (-) 807 WP_367043880.1 SLATT domain-containing protein -
  ABXJ52_RS19530 (ABXJ52_19530) - 4314351..4314692 (+) 342 WP_367043881.1 YbaB/EbfC family nucleoid-associated protein -
  ABXJ52_RS19535 (ABXJ52_19535) recR 4314760..4315359 (+) 600 WP_367043882.1 recombination mediator RecR Machinery gene
  ABXJ52_RS19540 (ABXJ52_19540) - 4315352..4316155 (+) 804 WP_367043883.1 DUF5063 domain-containing protein -
  ABXJ52_RS19545 (ABXJ52_19545) - 4316427..4317698 (+) 1272 WP_249588720.1 aspartate kinase -
  ABXJ52_RS19550 (ABXJ52_19550) - 4317695..4318756 (+) 1062 WP_367043884.1 aspartate-semialdehyde dehydrogenase -
  ABXJ52_RS19555 (ABXJ52_19555) - 4319133..4319792 (+) 660 WP_367043885.1 SigE family RNA polymerase sigma factor -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21845.20 Da        Isoelectric Point: 4.9976

>NTDB_id=918274 ABXJ52_RS19535 WP_367043882.1 4314760..4315359(+) (recR) [Streptomyces sp. Je 1-332]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAHSLLEVKDKVRFCATCGNVAQEELCNICRDPRRDLSV
ICVVEEPKDVVAIERTREFRGKYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=918274 ABXJ52_RS19535 WP_367043882.1 4314760..4315359(+) (recR) [Streptomyces sp. Je 1-332]
GTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGTTGGGCAGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTGCAGGCGGAGCCGACGGACGTGCGGCGTCTCGCGCACTCCCTCCTCGAGGTGAAGGACAAGGTCC
GCTTCTGCGCGACCTGCGGGAACGTCGCGCAGGAAGAGCTCTGCAACATCTGCCGCGACCCGCGCCGCGACCTCAGCGTC
ATCTGCGTGGTCGAGGAGCCGAAGGATGTCGTGGCGATCGAGCGTACGCGCGAGTTCCGGGGGAAGTACCACGTTCTGGG
CGGAGCGATCAGCCCGATCGAAGGGGTCGGTCCGGACGATCTGCGGATACGGGAACTGCTCGCGCGCCTGGCGGACGGCA
CGGTCACCGAGCTGATTCTGGCCACGGACCCGAACCTGGAGGGCGAGGCGACGGCGACGTACCTCGCACGGATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGGCTCCCTGTCGGGGGAGATCTGGAATACGCGGACGAGGTCACCCT
GGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(79-170)

Helix-hairpin-helix motif (HHH)

(2-27)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.102

98.492

0.543
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

54.124

97.487

0.528
  recR Streptococcus pneumoniae R6

47.423

97.487

0.462