Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   OCV39_RS02465 Genome accession   NZ_AP025472
Coordinates   504120..504638 (+) Length   172 a.a.
NCBI ID   WP_261888858.1    Uniprot ID   -
Organism   Vibrio cortegadensis strain CECT 7227     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 499120..509638
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV39_RS02455 gshA 501884..503461 (+) 1578 WP_113799278.1 glutamate--cysteine ligase -
  OCV39_RS02460 - 503485..504084 (+) 600 WP_017054182.1 hypothetical protein -
  OCV39_RS02465 luxS 504120..504638 (+) 519 WP_261888858.1 S-ribosylhomocysteine lyase Regulator
  OCV39_RS02470 - 504726..506000 (-) 1275 WP_017054180.1 HlyC/CorC family transporter -
  OCV39_RS02475 - 506145..506939 (-) 795 WP_113799273.1 inner membrane protein YpjD -
  OCV39_RS02480 ffh 507146..508528 (+) 1383 WP_029203537.1 signal recognition particle protein -
  OCV39_RS02485 rpsP 508735..508983 (+) 249 WP_261888859.1 30S ribosomal protein S16 -
  OCV39_RS02490 rimM 509009..509563 (+) 555 WP_113799269.1 ribosome maturation factor RimM -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 19162.95 Da        Isoelectric Point: 4.5412

>NTDB_id=91826 OCV39_RS02465 WP_261888858.1 504120..504638(+) (luxS) [Vibrio cortegadensis strain CECT 7227]
MPLLDSFTVDHTRMNAPAVRVAKKMQTPKGDTITVFDLRFTAPNKDILSERGIHTLEHLYAGFMRAHLNDESIEIIDISP
MGCRTGFYMCLIGTPSEEQVATAWLAAMKDVLKVESQNKIPELNEYQCGTASMHSLEQAQDIAQAIIDAGIEVNKNDELA
LPESMLQELKID

Nucleotide


Download         Length: 519 bp        

>NTDB_id=91826 OCV39_RS02465 WP_261888858.1 504120..504638(+) (luxS) [Vibrio cortegadensis strain CECT 7227]
ATGCCGTTACTGGATAGTTTTACTGTCGATCATACCCGTATGAATGCGCCAGCGGTACGAGTAGCCAAGAAGATGCAAAC
CCCAAAAGGCGATACTATTACGGTGTTTGATTTGCGTTTTACGGCTCCAAATAAGGATATTTTGTCTGAACGAGGTATTC
ATACCTTAGAGCATTTATATGCTGGGTTCATGCGTGCACATTTAAACGATGAGTCGATCGAGATTATTGATATTTCACCG
ATGGGCTGTCGTACCGGTTTTTACATGTGCTTAATTGGTACACCTTCTGAAGAGCAAGTCGCAACTGCTTGGCTTGCCGC
AATGAAAGATGTACTCAAAGTCGAGAGCCAAAATAAAATCCCAGAGCTAAATGAGTACCAGTGTGGAACGGCAAGCATGC
ACTCGCTGGAACAGGCTCAAGATATCGCTCAAGCCATCATTGATGCTGGAATTGAGGTGAATAAAAATGATGAATTGGCT
CTACCTGAGTCTATGTTACAAGAGCTTAAAATAGATTAA

Domains

Predicted by InterproScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

84.211

99.419

0.837

Multiple sequence alignment