Detailed information NTG0091823

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: OCV39_RS02345
• Genome accession: NZ_AP025472
• Coordinates: 482178..483152 (+)
• Length: 324 a.a.
• NCBI ID: WP_017054196.1
• Uniprot ID: A0A1E5CZ82
• Organism: Vibrio cortegadensis strain CECT 7227
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 477178..488152

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCV39_RS02310	ftsB	477183..477464 (+)	282	WP_017054203.1	cell division protein FtsB	-
OCV39_RS02315	ispD	477465..478175 (+)	711	WP_261888847.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
OCV39_RS02320	ispF	478172..478648 (+)	477	WP_261888848.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
OCV39_RS02325	truD	478680..479723 (+)	1044	WP_171757166.1	tRNA pseudouridine(13) synthase TruD	-
OCV39_RS02330	surE	479797..480546 (+)	750	WP_261888849.1	5'/3'-nucleotidase SurE	-
OCV39_RS02335	-	480543..481169 (+)	627	WP_136995819.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
OCV39_RS02340	nlpD	481172..482077 (+)	906	WP_261888850.1	murein hydrolase activator NlpD	-
OCV39_RS02345	rpoS	482178..483152 (+)	975	WP_017054196.1	RNA polymerase sigma factor RpoS	Regulator
OCV39_RS02350	mutS	483296..485857 (-)	2562	WP_261888851.1	DNA mismatch repair protein MutS	-
OCV39_RS02355	-	485942..486436 (+)	495	WP_261888852.1	CinA family protein	-
OCV39_RS02360	recA	486620..487660 (+)	1041	WP_017054193.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 324 a.a.
• Molecular weight: 36970.23 Da
• Isoelectric Point: 5.2624

>NTDB_id=91823 OCV39_RS02345 WP_017054196.1 482178..483152(+) (rpoS) [Vibrio cortegadensis strain CECT 7227]
MGISNAAKKVEEFGLNNKAMDAQKIKPTSAKKAEAKEEFEVSSKSLDATQLYLGEIGFSPLLAAEEEVLYARRALRGDEA
ARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRLPI
HVVKELNIYLRTARELSQKLDHEPTAEEIANQLDKPVDDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDIHNSDPEVS
TQDDDIKSSLIDWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREICLTRERVRQIQVEGLRRLREILIKQGLSMENLFN
IETD

Nucleotide

• Length: 975 bp

>NTDB_id=91823 OCV39_RS02345 WP_017054196.1 482178..483152(+) (rpoS) [Vibrio cortegadensis strain CECT 7227]
ATGGGTATAAGCAATGCAGCAAAAAAAGTTGAAGAATTTGGTCTAAATAATAAAGCGATGGATGCGCAAAAAATTAAACC
AACCTCAGCCAAGAAGGCAGAGGCGAAAGAGGAATTTGAAGTTTCCTCGAAAAGCCTAGATGCCACGCAACTCTATCTCG
GAGAAATTGGTTTTTCTCCACTCCTAGCAGCAGAAGAAGAAGTTTTATACGCCCGACGTGCACTACGCGGTGATGAAGCC
GCTCGTAAACGTATGATCGAAAGTAACCTTCGTCTTGTTGTGAAAATATCTCGTCGCTATAGCAACCGTGGTTTAGCACT
ACTTGACCTTATTGAAGAGGGTAACTTAGGCTTGATCCGCGCCGTTGAAAAATTTGATCCGGAACGTGGCTTCCGTTTCT
CTACCTATGCAACATGGTGGATCAGACAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACTATTCGTCTTCCTATT
CACGTCGTTAAAGAGCTAAACATCTATCTGCGAACCGCTCGTGAACTGTCACAAAAGCTTGATCATGAGCCGACAGCAGA
AGAGATCGCAAACCAGCTTGATAAACCTGTCGATGATGTAAGCAAGATGCTGCGCCTCAATGAGCGTGTCAGTTCTGTTG
ATACTCCCATTGGTGGTGATGGTGAAAAGGCACTTCTGGATATTATCCCTGACATACATAATTCTGACCCGGAAGTTTCC
ACTCAAGATGATGATATTAAATCGTCATTGATTGACTGGTTAGATGAACTGAATCCAAAACAGAAAGAAGTGTTAGCTCG
TCGTTTTGGGTTACTAGGCTATGAGCCATCCACTTTAGAAGAGGTGGGACGTGAAATTTGTTTAACTCGCGAACGAGTGC
GTCAGATCCAAGTAGAAGGTCTACGTCGTTTACGTGAGATCCTGATTAAACAAGGTCTGAGCATGGAAAACCTATTCAAT
ATCGAAACAGATTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (165-238)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (47-80)

• Sigma-70 region 2 (Sigma70_r2) (85-154)

• Sigma-70, region 4 (Sigma70_r4) (253-306)

3D structure

• AlphaFold DB: A0A1E5CZ82

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	80.539	100	0.83