Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   OCV20_RS05250 Genome accession   NZ_AP025470
Coordinates   1107432..1108820 (+) Length   462 a.a.
NCBI ID   WP_004734031.1    Uniprot ID   A0A0T7ERT3
Organism   Vibrio coralliirubri strain DSM 27495     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 1102432..1113820
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS05230 - 1102558..1103361 (+) 804 WP_261881440.1 IS3 family transposase -
  OCV20_RS05235 - 1103426..1104346 (+) 921 WP_086773621.1 IS5 family transposase -
  OCV20_RS05245 uvrB 1105100..1107130 (+) 2031 WP_050652938.1 excinuclease ABC subunit UvrB -
  OCV20_RS05250 luxO 1107432..1108820 (+) 1389 WP_004734031.1 quorum-sensing sigma-54 dependent transcriptional regulator LuxO Regulator
  OCV20_RS05255 luxU 1108845..1109189 (+) 345 WP_017066591.1 quorum-sensing phosphorelay protein LuxU -
  OCV20_RS05260 - 1109265..1110152 (-) 888 WP_086775094.1 YvcK family protein -
  OCV20_RS05265 moaA 1110488..1111477 (+) 990 WP_009848642.1 GTP 3',8-cyclase MoaA -
  OCV20_RS05270 moaB 1111834..1112346 (+) 513 WP_004734027.1 molybdenum cofactor biosynthesis protein B -
  OCV20_RS05275 moaC 1112359..1112838 (+) 480 WP_004734026.1 cyclic pyranopterin monophosphate synthase MoaC -
  OCV20_RS05280 moaD 1112835..1113080 (+) 246 WP_019823606.1 molybdopterin synthase sulfur carrier subunit -
  OCV20_RS05285 moaE 1113083..1113538 (+) 456 WP_081230609.1 molybdopterin synthase catalytic subunit MoaE -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 51762.31 Da        Isoelectric Point: 6.4047

>NTDB_id=91787 OCV20_RS05250 WP_004734031.1 1107432..1108820(+) (luxO) [Vibrio coralliirubri strain DSM 27495]
MQSKTLDNKSKYLLMVEDTASVAALYRSYLTPLEIDINIVGTGRDAIESLNHRIPDLILLDLRLPDMTGMDVLFAVKQKY
PEVPVIFMTAHGSIDTAVEAMRHGSQDFLIKPCEADRLRITVNNAIRKATKLKNSSEHPGNQNYQGFIGSSQTMQQVYRT
IDSAASSKASIFITGESGTGKEVCAEAIHAASKRGDKPFIAINCAAIPKDLIESELFGHVKGAFTGAATDRQGAAELADG
GTLFLDELCEMDLELQTKLLRFIQTGTFQKVGSSKMKSVDVRFVCATNRDPWKEVQEGRFREDLYYRLYVIPLHLPPLRE
RGEDVIEIAYSLLGYMSVEEGKAFVRFAQEVLDRFNQYEWPGNVRQLQNVLRNVVVLNNGKEITLNMLPPPLNQPIENSL
RLKEKQNEDITVKDIFPLWITEKTAIEQAIKACDGNIPRAAGFLDVSPSTIYRKLQTWNAKQ

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=91787 OCV20_RS05250 WP_004734031.1 1107432..1108820(+) (luxO) [Vibrio coralliirubri strain DSM 27495]
ATGCAATCAAAAACGCTAGATAACAAATCGAAGTATTTGTTGATGGTAGAAGATACCGCTTCGGTAGCAGCTTTATATCG
TTCGTATCTTACACCGCTCGAAATTGATATCAACATTGTTGGCACTGGCCGCGATGCAATCGAGAGTTTGAATCATCGAA
TCCCAGACCTTATTTTATTAGATCTACGTCTGCCTGATATGACGGGTATGGACGTGCTATTTGCTGTAAAACAAAAGTAC
CCTGAAGTTCCGGTTATCTTCATGACGGCTCATGGCTCTATCGATACCGCCGTAGAAGCGATGCGTCATGGTTCTCAAGA
TTTCCTTATCAAACCGTGTGAAGCCGACCGACTCCGTATTACGGTGAACAACGCGATCCGCAAAGCCACCAAGCTTAAAA
ACAGCTCGGAACACCCGGGAAACCAAAATTACCAAGGCTTTATCGGCAGCAGCCAAACCATGCAGCAGGTTTACCGAACG
ATTGATTCTGCTGCATCGAGTAAGGCGAGCATTTTCATCACGGGTGAAAGTGGTACCGGTAAAGAGGTATGTGCAGAAGC
CATTCATGCGGCGAGTAAGCGTGGCGATAAGCCGTTTATCGCGATTAACTGTGCCGCTATCCCAAAAGATTTGATTGAAA
GTGAGCTGTTTGGCCACGTTAAAGGTGCCTTTACCGGTGCTGCGACCGATCGCCAAGGTGCTGCTGAGCTTGCTGATGGT
GGAACACTGTTTCTTGATGAACTGTGCGAGATGGATTTAGAGCTACAGACTAAGCTGCTGCGCTTTATCCAAACCGGTAC
TTTTCAAAAAGTCGGCTCTTCGAAGATGAAGAGTGTTGATGTTCGTTTTGTGTGTGCGACCAACCGTGACCCTTGGAAAG
AAGTACAAGAAGGTCGCTTTAGAGAAGATTTATACTATCGTTTATACGTGATTCCATTGCACTTGCCGCCATTGCGCGAG
CGTGGTGAAGATGTCATCGAGATTGCGTATTCTCTGCTAGGCTATATGTCGGTCGAGGAGGGGAAGGCGTTTGTACGTTT
TGCTCAGGAAGTACTTGATCGCTTTAATCAATATGAGTGGCCGGGTAACGTTCGTCAGCTACAAAACGTGTTGCGAAACG
TGGTGGTTTTGAATAACGGCAAAGAGATTACTCTCAACATGCTTCCACCACCGTTGAACCAACCGATTGAAAACAGTCTG
CGATTGAAAGAGAAGCAGAATGAAGACATCACGGTAAAAGATATTTTCCCATTGTGGATCACTGAGAAAACGGCTATCGA
ACAAGCCATTAAAGCGTGTGATGGCAACATCCCCCGTGCGGCAGGTTTCTTAGATGTCAGTCCATCGACGATATACCGTA
AGTTGCAAACGTGGAATGCGAAGCAGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(14-122)

Bacterial regulatory protein, Fis family (HTH_8)

(418-456)

Sigma-54 interaction domain (Sigma54_activat)

(148-313)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T7ERT3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

86.384

96.97

0.838
  pilR Pseudomonas aeruginosa PAK

38.085

97.186

0.37

Multiple sequence alignment