Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV20_RS02795 Genome accession   NZ_AP025470
Coordinates   548099..548704 (-) Length   201 a.a.
NCBI ID   WP_019824386.1    Uniprot ID   A0A1E5FTC6
Organism   Vibrio coralliirubri strain DSM 27495     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 543099..553704
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV20_RS02785 lpdA 545176..546606 (+) 1431 WP_017059440.1 dihydrolipoyl dehydrogenase -
  OCV20_RS02790 - 546822..547993 (+) 1172 WP_108721736.1 IS3 family transposase -
  OCV20_RS02795 opaR 548099..548704 (-) 606 WP_019824386.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV20_RS02800 hpt 549041..549571 (+) 531 WP_017059438.1 hypoxanthine phosphoribosyltransferase -
  OCV20_RS02805 can 549645..550313 (-) 669 WP_017059437.1 carbonate dehydratase -
  OCV20_RS02810 - 550600..552231 (+) 1632 WP_202910125.1 SulP family inorganic anion transporter -
  OCV20_RS02815 - 552581..553498 (+) 918 WP_017059435.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23208.45 Da        Isoelectric Point: 6.2915

>NTDB_id=91785 OCV20_RS02795 WP_019824386.1 548099..548704(-) (opaR) [Vibrio coralliirubri strain DSM 27495]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=91785 OCV20_RS02795 WP_019824386.1 548099..548704(-) (opaR) [Vibrio coralliirubri strain DSM 27495]
ATGGACTCAATATCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAATTGATGGAAATCGCTCTTGA
GGTATTCTCTCGCCGCGGTATCGGTCGTGGTGGACACGCTGATATTGCAGACATCGCTCAGGTGTCTGTCGCAACGGTAT
TTAACTACTTCCCTACCCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTACGCCAATTCTCTAACTTCCTTTCA
GACAATATCGATCTGGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACGTTAGTGGCTCAAGA
TAGCCATTGGTTAAACGTATGGTTCGAATGGAGCGCTTCGACTCGTGATGAAGTATGGCCGCTATTCGTAACCACCAACC
GCACTAACCAAATGTTAGTACAAAACATGTTTAGCAAAGCGATTGAACGCGGCGAAGTTTGCGACGATCACGATCCTAAA
CATCTAGCGAACCTATTCCACGGCATTTGCTACTCGCTATTCATCCAAGCGAAACGTGTAGAAACGCCAGAAGAGCTTTC
AAGCTTAACGGATAGCTACTTGAACATGCTGTGCATTTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5FTC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment