Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   AB0R82_RS14395 Genome accession   NZ_CP160220
Coordinates   2773130..2774902 (-) Length   590 a.a.
NCBI ID   WP_123372947.1    Uniprot ID   -
Organism   Bacillus subtilis strain JM553     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2768130..2779902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AB0R82_RS14375 (AB0R82_14375) sdhA 2768349..2770109 (-) 1761 WP_003229567.1 succinate dehydrogenase flavoprotein subunit -
  AB0R82_RS14380 (AB0R82_14380) sdhC 2770143..2770751 (-) 609 WP_003222512.1 succinate dehydrogenase cytochrome B558 -
  AB0R82_RS14385 (AB0R82_14385) yslB 2771044..2771490 (+) 447 WP_003222508.1 YslB family protein -
  AB0R82_RS14390 (AB0R82_14390) lysCA 2771534..2772760 (-) 1227 WP_198878585.1 aspartate kinase -
  AB0R82_RS14395 (AB0R82_14395) uvrC 2773130..2774902 (-) 1773 WP_123372947.1 excinuclease ABC subunit UvrC Machinery gene
  AB0R82_RS14400 (AB0R82_14400) trxA 2775038..2775352 (-) 315 WP_003222500.1 thioredoxin -
  AB0R82_RS14405 (AB0R82_14405) abfB 2775675..2777162 (-) 1488 WP_088327483.1 alpha-L-arabinofuranosidase AbfB -
  AB0R82_RS14410 (AB0R82_14410) etfA 2777380..2778357 (-) 978 WP_198878584.1 electron transfer flavoprotein subunit alpha -
  AB0R82_RS14415 (AB0R82_14415) etfB 2778393..2779166 (-) 774 WP_014480500.1 electron transfer flavoprotein subunit beta -

Sequence

Protein


Download         Length: 590 a.a.        Molecular weight: 68530.35 Da        Isoelectric Point: 9.4732

>NTDB_id=917639 AB0R82_RS14395 WP_123372947.1 2773130..2774902(-) (uvrC) [Bacillus subtilis strain JM553]
MNKQLKEKLALLPDQPGCYLMKDRQQTVIYVGKAKVLKNRVRSYFTGSHDAKTQRLVTEIEDFEYIVTSSNLEALILEMN
LIKKHDPKYNVMLKDDKTYPFIKLTHERHPRLIVTRNVKKDKGRYFGPYPNVQAARETKKLLDRLYPLRKCSKLPDRVCL
YYHLGQCLAPCVKDISEETNRELVESITRFLRGGYNEVKKELEEKMHEAAENLEFERAKELRDQIAHIESTMEKQKMTMN
DLVDRDVFAYAYDKGWMCVQVFFIRQGKLIERDVSMFPLYQEADEEFLTFIGQFYSKNNHFLPKEILVPDSVDQSMIEQL
LETNVHQPKKGPKKELLMLAHKNAKIALKEKFSLIERDEERSIGAVQKLGEALNIYTPHRIEAFDNSNIQGTNPVSAMIV
FIDGKPYKKEYRKYKIKTVTGPDDYGSMREVVRRRYTRVLRENLPLPDLIIIDGGKGQINAARDVIENELGLDIPIAGLA
KDEKHRTSNLLIGEPLEVVYLERNSQEFYLLQRIQDEVHRFAISFHRQIRGKSAFQSVLDDIPGIGEKRKKMLLKHFGSV
KKMKEASLEDIKKAGVPTAAAQLLYDKLQK

Nucleotide


Download         Length: 1773 bp        

>NTDB_id=917639 AB0R82_RS14395 WP_123372947.1 2773130..2774902(-) (uvrC) [Bacillus subtilis strain JM553]
ATGAACAAACAACTGAAAGAAAAACTCGCCCTCCTTCCTGATCAACCGGGTTGTTATCTCATGAAGGACCGGCAGCAGAC
TGTGATCTACGTAGGGAAAGCAAAAGTGCTGAAAAACAGAGTGCGCTCCTACTTCACCGGTTCTCACGACGCGAAAACCC
AAAGGCTTGTGACGGAAATCGAGGATTTTGAATATATCGTGACGTCCTCCAATCTTGAAGCGCTTATTTTAGAAATGAAT
CTGATCAAAAAGCATGATCCGAAATACAACGTCATGCTCAAAGACGACAAAACCTATCCTTTCATAAAACTCACCCATGA
ACGCCACCCAAGGCTGATTGTCACACGCAATGTCAAAAAAGACAAAGGGCGCTATTTCGGGCCGTATCCGAATGTACAGG
CAGCAAGGGAAACAAAAAAACTGCTCGACCGTCTGTATCCTCTCAGAAAATGCTCCAAGCTCCCGGACAGAGTGTGCCTT
TACTATCATCTGGGCCAATGCCTCGCTCCGTGTGTAAAGGATATTTCCGAAGAGACGAACAGAGAGCTGGTTGAAAGCAT
TACACGTTTCTTAAGGGGCGGCTATAATGAGGTCAAAAAAGAGCTTGAAGAGAAAATGCATGAAGCTGCTGAGAATCTTG
AGTTTGAACGAGCTAAAGAGCTTCGTGACCAAATTGCCCATATTGAATCAACGATGGAAAAACAAAAAATGACGATGAAC
GATCTAGTCGACCGTGATGTATTCGCGTACGCGTACGATAAGGGCTGGATGTGCGTGCAGGTCTTTTTCATCCGCCAAGG
GAAGCTCATTGAACGCGATGTCAGCATGTTCCCGCTTTATCAGGAAGCAGATGAAGAGTTCCTCACGTTCATCGGGCAGT
TCTATTCAAAAAACAACCACTTCCTTCCGAAGGAGATTTTAGTTCCGGACAGCGTAGATCAATCCATGATCGAGCAGCTG
CTGGAAACAAACGTTCACCAGCCGAAGAAAGGCCCGAAAAAAGAACTGCTCATGCTTGCCCATAAAAATGCGAAAATCGC
ATTGAAAGAAAAATTCTCTTTAATCGAACGGGACGAGGAGCGTTCAATCGGGGCAGTGCAGAAACTAGGTGAGGCATTAA
ATATTTATACGCCGCACAGAATTGAAGCGTTTGATAACTCAAACATACAGGGGACAAACCCGGTTTCCGCGATGATTGTG
TTTATCGATGGCAAACCATACAAAAAGGAATACCGCAAATATAAAATCAAAACTGTTACAGGGCCGGATGATTACGGTTC
TATGAGAGAGGTTGTCAGAAGACGCTATACGAGAGTGCTTCGTGAGAATCTGCCGCTGCCCGATCTGATTATCATTGACG
GAGGAAAAGGGCAGATCAACGCAGCAAGGGATGTCATTGAAAATGAACTCGGCTTGGATATCCCGATCGCCGGTTTAGCG
AAAGATGAAAAACACAGAACCTCAAATTTACTGATCGGTGAGCCGCTGGAGGTAGTGTATCTGGAACGAAACAGCCAGGA
ATTTTACCTCCTGCAGCGCATTCAAGACGAGGTGCATCGTTTTGCAATCAGTTTTCACAGGCAAATCCGCGGAAAAAGCG
CGTTTCAATCCGTTTTGGACGACATCCCGGGTATCGGAGAGAAAAGAAAGAAAATGCTGTTAAAGCATTTCGGTTCCGTT
AAAAAAATGAAGGAAGCAAGCCTTGAGGACATCAAAAAAGCCGGTGTTCCCACAGCGGCGGCTCAGCTCCTTTACGACAA
ATTGCAAAAATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-523)

GIY-YIG catalytic domain (GIY-YIG)

(16-90)

UvrB/uvrC motif (UVR)

(197-229)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

59.184

99.661

0.59
  uvrC Streptococcus pneumoniae R6

58.844

99.661

0.586
  uvrC Streptococcus pneumoniae D39

58.844

99.661

0.586