Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   U9I39_RS00050 Genome accession   NZ_CP141589
Coordinates   10924..11514 (+) Length   196 a.a.
NCBI ID   WP_346222641.1    Uniprot ID   -
Organism   Lacticaseibacillus rhamnosus strain S22825     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5924..16514
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U9I39_RS00030 (U9I39_00030) gyrA 6540..9152 (+) 2613 WP_033572074.1 DNA gyrase subunit A -
  U9I39_RS00035 (U9I39_00035) deoC 9226..9930 (-) 705 WP_033572075.1 deoxyribose-phosphate aldolase -
  U9I39_RS00040 (U9I39_00040) ssb 10040..10471 (+) 432 WP_005690380.1 single-stranded DNA-binding protein -
  U9I39_RS00045 (U9I39_00045) rpsF 10598..10894 (+) 297 WP_005685677.1 30S ribosomal protein S6 -
  U9I39_RS00050 (U9I39_00050) ssb 10924..11514 (+) 591 WP_346222641.1 single-stranded DNA-binding protein Machinery gene
  U9I39_RS00055 (U9I39_00055) rpsR 11605..11841 (+) 237 WP_003568467.1 30S ribosomal protein S18 -
  U9I39_RS00060 (U9I39_00060) - 12029..12535 (-) 507 WP_005685670.1 type 1 glutamine amidotransferase domain-containing protein -
  U9I39_RS00065 (U9I39_00065) - 12846..14324 (+) 1479 WP_033572077.1 cytochrome ubiquinol oxidase subunit I -
  U9I39_RS00070 (U9I39_00070) cydB 14317..15336 (+) 1020 WP_257586089.1 cytochrome d ubiquinol oxidase subunit II -
  U9I39_RS00075 (U9I39_00075) - 15376..15570 (+) 195 WP_005707490.1 hypothetical protein -
  U9I39_RS00080 (U9I39_00080) - 15649..16074 (-) 426 WP_033572078.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21004.72 Da        Isoelectric Point: 4.7381

>NTDB_id=917540 U9I39_RS00050 WP_346222641.1 10924..11514(+) (ssb) [Lacticaseibacillus rhamnosus strain S22825]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQENQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF

Nucleotide


Download         Length: 591 bp        

>NTDB_id=917540 U9I39_RS00050 WP_346222641.1 10924..11514(+) (ssb) [Lacticaseibacillus rhamnosus strain S22825]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATCAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAAGGATCATTGGTTGGTGTTGAGGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAATCACGGGC
AACCACCCAACAGCGGCCATCTGAACCTGCTAATCCAGCAGGTCAGGAAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGACAAAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGATATTTCCGATGATGATCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

60.204

100

0.602
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.246

100

0.5