Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   OCV52_RS13195 Genome accession   NZ_AP025465
Coordinates   2893082..2894062 (-) Length   326 a.a.
NCBI ID   WP_150897807.1    Uniprot ID   A0A7V7NST6
Organism   Vibrio chagasii strain LMG 21353     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 2888082..2899062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS13180 recA 2888633..2889673 (-) 1041 WP_004739060.1 recombinase RecA Machinery gene
  OCV52_RS13185 pncC 2889815..2890309 (-) 495 WP_137408056.1 nicotinamide-nucleotide amidase -
  OCV52_RS13190 mutS 2890434..2892995 (+) 2562 WP_137408055.1 DNA mismatch repair protein MutS -
  OCV52_RS13195 rpoS 2893082..2894062 (-) 981 WP_150897807.1 RNA polymerase sigma factor RpoS Regulator
  OCV52_RS13200 nlpD 2894161..2895075 (-) 915 WP_102424622.1 murein hydrolase activator NlpD -
  OCV52_RS13205 - 2895110..2895736 (-) 627 WP_105025545.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  OCV52_RS13210 surE 2895737..2896480 (-) 744 WP_137408053.1 5'/3'-nucleotidase SurE -
  OCV52_RS13215 truD 2896558..2897604 (-) 1047 WP_137408052.1 tRNA pseudouridine(13) synthase TruD -
  OCV52_RS13220 ispF 2897627..2898106 (-) 480 WP_004739053.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  OCV52_RS13225 ispD 2898109..2898810 (-) 702 WP_004739052.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -

Sequence

Protein


Download         Length: 326 a.a.        Molecular weight: 37428.57 Da        Isoelectric Point: 4.9072

>NTDB_id=91746 OCV52_RS13195 WP_150897807.1 2893082..2894062(-) (rpoS) [Vibrio chagasii strain LMG 21353]
MSISNAVIKEEFDLDQVTTESETLEQEKRTATKKAEVKEETEFTSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRGD
EAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIRL
PIHVVKELNIYLRTARELSQKLDHEPTAEEIASKLDKPVGDVSKMLRLNERVSSVDTPIGGDGEKALLDIIPDINNSDPE
VSTQDSDIKNSLIFWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREISLTRERVRQIQVEGLRRLREILIKQGLNMENL
FNVEND

Nucleotide


Download         Length: 981 bp        

>NTDB_id=91746 OCV52_RS13195 WP_150897807.1 2893082..2894062(-) (rpoS) [Vibrio chagasii strain LMG 21353]
ATGAGTATAAGCAATGCAGTAATCAAAGAAGAGTTCGATCTTGACCAAGTAACCACGGAATCGGAAACACTTGAACAAGA
GAAGCGAACAGCCACTAAGAAAGCCGAAGTTAAAGAAGAAACAGAATTTACTTCCAAGAGTTTAGATGCGACGCAACTGT
ATCTGGGCGAAATCGGTTTCTCACCACTACTAACCGCTGAAGAAGAGGTGCTTTACGCACGTCGAGCTCTACGCGGTGAT
GAAGCAGCACGCAAACGCATGATCGAGAGTAACCTGCGTTTGGTAGTGAAAATTTCCCGTCGTTATAGCAACCGTGGCTT
GGCACTTCTCGATCTAATCGAAGAAGGCAACCTAGGTTTGATTCGCGCCGTCGAGAAATTTGACCCAGAGCGTGGCTTCC
GTTTTTCTACTTACGCGACATGGTGGATTCGTCAGACCATAGAGCGTGCCCTGATGAATCAGACTCGCACTATCCGTTTG
CCTATTCATGTTGTGAAAGAGCTGAACATCTACCTACGTACTGCAAGAGAACTATCACAAAAGCTTGACCACGAACCAAC
AGCTGAAGAGATCGCTTCTAAGCTCGATAAGCCGGTTGGTGATGTGAGTAAGATGCTTCGTTTAAACGAAAGAGTGAGTT
CTGTAGATACGCCAATTGGTGGTGATGGTGAGAAAGCACTGTTGGATATTATTCCAGACATCAACAATTCTGACCCTGAG
GTTTCAACTCAAGACAGTGATATCAAGAACTCACTGATCTTCTGGCTTGATGAACTGAATCCTAAGCAGAAAGAGGTGCT
TGCACGTCGATTTGGACTACTAGGTTATGAACCGTCAACGCTAGAAGAAGTTGGCCGTGAAATCAGCCTGACTCGTGAGC
GAGTTCGTCAAATCCAAGTTGAAGGTCTGCGTCGTCTACGTGAGATCCTAATCAAGCAAGGTCTGAACATGGAAAACCTG
TTCAACGTTGAAAACGACTAA

Domains

Predicted by InterproScan.

Sigma-70 region 3 (Sigma70_r3)

(167-240)

Sigma-70 region 2 (Sigma70_r2)

(87-156)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(49-82)

Sigma-70, region 4 (Sigma70_r4)

(255-308)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7V7NST6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

82.335

100

0.844

Multiple sequence alignment