Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV52_RS12930 Genome accession   NZ_AP025465
Coordinates   2842412..2843017 (+) Length   201 a.a.
NCBI ID   WP_004738173.1    Uniprot ID   -
Organism   Vibrio chagasii strain LMG 21353     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2837412..2848017
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV52_RS12910 - 2837643..2838560 (-) 918 WP_137407239.1 ABC transporter ATP-binding protein -
  OCV52_RS12915 - 2838886..2840517 (-) 1632 WP_206383563.1 SulP family inorganic anion transporter -
  OCV52_RS12920 can 2840804..2841472 (+) 669 WP_004738177.1 carbonate dehydratase -
  OCV52_RS12925 hpt 2841545..2842075 (-) 531 WP_061032638.1 hypoxanthine phosphoribosyltransferase -
  OCV52_RS12930 opaR 2842412..2843017 (+) 606 WP_004738173.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV52_RS12935 - 2843778..2844803 (-) 1026 WP_261900849.1 IS110 family transposase -
  OCV52_RS12940 lpdA 2845100..2846530 (-) 1431 WP_004738171.1 dihydrolipoyl dehydrogenase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23225.44 Da        Isoelectric Point: 6.2910

>NTDB_id=91739 OCV52_RS12930 WP_004738173.1 2842412..2843017(+) (opaR) [Vibrio chagasii strain LMG 21353]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVDTNEELSTLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=91739 OCV52_RS12930 WP_004738173.1 2842412..2843017(+) (opaR) [Vibrio chagasii strain LMG 21353]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAGCTGATGGAAATCGCGCTTGA
AGTATTCTCTCGTCGCGGCATTGGCCGTGGTGGTCACGCTGACATTGCAGATATCGCTCAGGTATCAGTAGCAACAGTAT
TTAACTACTTCCCTACTCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTCCGTCAATTCTCAAACTTCCTTTCA
GACAATATCGATCTAGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACACTAGTAGCTCAAGA
CAGCCACTGGTTGAACGTATGGTTCGAATGGAGCGCATCGACGCGTGACGAAGTATGGCCACTGTTCGTAACGACAAACC
GCACTAACCAAATGTTGGTACAAAACATGTTTAGTAAAGCGATTGAGCGCGGCGAAGTTTGTGACGATCACGATCCTAAG
CATCTTGCGAATCTGTTCCACGGCATCTGCTACTCGCTATTTATCCAAGCGAAACGTGTCGATACCAATGAAGAGTTGTC
GACTTTAACTGACAGCTACTTGAACATGTTGTGTATCTATAAGTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment