Detailed information NTG0917147

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: UXR57_RS05820
• Genome accession: NZ_CP141536
• Coordinates: 1289376..1290269 (-)
• Length: 297 a.a.
• NCBI ID: WP_016445609.1
• Uniprot ID: A0A1H3L211
• Organism: Delftia lacustris strain LzhVag01
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1284376..1295269

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
UXR57_RS05790	argJ	1284699..1285931 (+)	1233	WP_017405522.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-
UXR57_RS05795	-	1286097..1287056 (+)	960	WP_244387859.1	ATP-binding protein	-
UXR57_RS05800	mutT	1287107..1287613 (+)	507	WP_043789746.1	8-oxo-dGTP diphosphatase MutT	-
UXR57_RS05805	-	1287624..1287878 (-)	255	WP_016451023.1	DNA gyrase inhibitor YacG	-
UXR57_RS05810	zapD	1287878..1288633 (-)	756	WP_016445607.1	cell division protein ZapD	-
UXR57_RS05815	coaE	1288723..1289361 (-)	639	WP_016451024.1	dephospho-CoA kinase	-
UXR57_RS05820	pilD	1289376..1290269 (-)	894	WP_016445609.1	prepilin peptidase	Machinery gene
UXR57_RS05825	pilC	1290269..1291486 (-)	1218	WP_016445610.1	type II secretion system F family protein	Machinery gene
UXR57_RS05830	pilB	1291525..1293267 (-)	1743	WP_034364744.1	type IV-A pilus assembly ATPase PilB	Machinery gene
UXR57_RS05840	-	1293504..1294433 (-)	930	WP_034364039.1	polyprenyl synthetase family protein	-
UXR57_RS05845	rplU	1294664..1294975 (+)	312	WP_012207284.1	50S ribosomal protein L21	-
UXR57_RS05850	rpmA	1294991..1295248 (+)	258	WP_012207283.1	50S ribosomal protein L27	-

Sequence

Protein

• Length: 297 a.a.
• Molecular weight: 31842.37 Da
• Isoelectric Point: 6.9135

>NTDB_id=917147 UXR57_RS05820 WP_016445609.1 1289376..1290269(-) (pilD) [Delftia lacustris strain LzhVag01]
MVLELWMQAALGGLLGLLVGSFLNVVVHRLPRMMEQQWNAECAQWAQEQSSSSATPSPATAPPPAEAPLSLSRPRSRCPH
CGHAIHWYENIPVLSYLALRGRCSECKASISIRYPLVELACAALFAYCAAQWGITPTGAAWCLFSAALLSLALIDWDTTL
LPDDITLPLLWAGLLSSALHWTAVPLADAVWGAAAGYLSLWLVYWAFKLATGKEGMGYGDFKLFAALGAWFGWQALVPII
LISSVIGAIVGIALKINSRLREGGYVPFGPFLAGAGFAAMVFGPQQMLQSLLAALGL

Nucleotide

• Length: 894 bp

>NTDB_id=917147 UXR57_RS05820 WP_016445609.1 1289376..1290269(-) (pilD) [Delftia lacustris strain LzhVag01]
ATGGTTTTGGAGCTCTGGATGCAGGCTGCATTGGGCGGCCTGCTGGGCCTGTTGGTTGGCAGCTTTCTCAACGTGGTGGT
GCATAGGCTGCCCCGCATGATGGAGCAGCAATGGAATGCGGAATGCGCCCAATGGGCGCAAGAGCAATCTTCATCCTCCG
CCACGCCATCGCCCGCCACAGCGCCGCCGCCTGCCGAGGCGCCCCTGAGCCTGAGCCGCCCCCGCTCGCGCTGCCCGCAT
TGCGGCCATGCCATCCACTGGTACGAAAACATTCCCGTGCTCAGTTATCTGGCGCTGCGGGGCCGGTGCTCCGAATGCAA
GGCGTCGATCAGCATCCGCTATCCGCTGGTGGAATTGGCCTGCGCCGCGCTGTTTGCCTACTGTGCGGCGCAATGGGGCA
TCACGCCCACAGGCGCTGCCTGGTGCCTTTTCAGTGCGGCCTTGCTGAGCCTGGCATTGATCGACTGGGACACCACACTG
CTTCCCGACGACATCACCCTGCCCTTGCTGTGGGCCGGACTGCTGTCGTCGGCGCTGCACTGGACCGCCGTGCCTCTGGC
CGACGCGGTATGGGGCGCTGCAGCGGGCTATCTCTCGCTGTGGCTGGTTTACTGGGCCTTCAAGCTGGCCACCGGCAAGG
AAGGCATGGGCTACGGCGACTTCAAGCTGTTTGCCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCACTCGTGCCCATCATC
CTGATCTCGTCGGTGATTGGCGCCATCGTGGGCATCGCGTTGAAGATCAACAGCCGCCTGCGTGAGGGCGGCTATGTTCC
CTTCGGCCCCTTTCTGGCGGGCGCCGGCTTTGCAGCCATGGTGTTCGGACCGCAGCAGATGCTGCAATCCCTATTGGCGG
CCTTGGGCCTTTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (14-131)

• Type IV leader peptidase family (Peptidase_A24) (143-252)

3D structure

• AlphaFold DB: A0A1H3L211

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	51.59	95.286	0.492
pilD	Vibrio campbellii strain DS40M4	46.416	98.653	0.458
pilD	Acinetobacter nosocomialis M2	44.364	92.593	0.411
pilD	Neisseria gonorrhoeae MS11	45.865	89.562	0.411
pilD	Acinetobacter baumannii D1279779	44	92.593	0.407