Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | UHR80_RS10160 | Genome accession | NZ_CP141330 |
| Coordinates | 2176259..2176849 (+) | Length | 196 a.a. |
| NCBI ID | WP_005709832.1 | Uniprot ID | A0A0J6XXP0 |
| Organism | Lacticaseibacillus rhamnosus strain S262-4W | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Genomic island | 2173739..2191196 | 2176259..2176849 | within | 0 |
Gene organization within MGE regions
Location: 2173739..2191196
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| UHR80_RS10130 (UHR80_10130) | - | 2173739..2173837 (+) | 99 | Protein_1987 | single-stranded DNA-binding protein | - |
| UHR80_RS10135 (UHR80_10135) | - | 2174217..2174444 (+) | 228 | WP_012807316.1 | hypothetical protein | - |
| UHR80_RS10140 (UHR80_10140) | - | 2174539..2175051 (+) | 513 | WP_223804855.1 | PedC/BrcD family bacteriocin maturation disulfide isomerase | - |
| UHR80_RS10145 (UHR80_10145) | - | 2175179..2175265 (-) | 87 | Protein_1990 | deoxyribose-phosphate aldolase | - |
| UHR80_RS10150 (UHR80_10150) | ssb | 2175375..2175806 (+) | 432 | WP_005690380.1 | single-stranded DNA-binding protein | - |
| UHR80_RS10155 (UHR80_10155) | rpsF | 2175933..2176229 (+) | 297 | WP_005685677.1 | 30S ribosomal protein S6 | - |
| UHR80_RS10160 (UHR80_10160) | ssb | 2176259..2176849 (+) | 591 | WP_005709832.1 | single-stranded DNA-binding protein | Machinery gene |
| UHR80_RS10165 (UHR80_10165) | rpsR | 2176941..2177177 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| UHR80_RS10170 (UHR80_10170) | - | 2177571..2178077 (-) | 507 | WP_005685670.1 | type 1 glutamine amidotransferase domain-containing protein | - |
| UHR80_RS10175 (UHR80_10175) | - | 2178388..2179866 (+) | 1479 | WP_014568874.1 | cytochrome ubiquinol oxidase subunit I | - |
| UHR80_RS10180 (UHR80_10180) | cydB | 2179859..2180878 (+) | 1020 | WP_014568875.1 | cytochrome d ubiquinol oxidase subunit II | - |
| UHR80_RS10185 (UHR80_10185) | - | 2180918..2181112 (+) | 195 | WP_005707490.1 | hypothetical protein | - |
| UHR80_RS10190 (UHR80_10190) | - | 2181191..2181448 (-) | 258 | WP_015764802.1 | hypothetical protein | - |
| UHR80_RS10195 (UHR80_10195) | - | 2181604..2182620 (+) | 1017 | WP_014568877.1 | IS30 family transposase | - |
| UHR80_RS10200 (UHR80_10200) | - | 2183656..2184333 (+) | 678 | WP_014568879.1 | CPBP family intramembrane glutamic endopeptidase | - |
| UHR80_RS10205 (UHR80_10205) | - | 2184725..2184865 (+) | 141 | WP_014568880.1 | hypothetical protein | - |
| UHR80_RS10210 (UHR80_10210) | - | 2184877..2186292 (-) | 1416 | WP_015764803.1 | IS5-like element ISLrh2 family transposase | - |
| UHR80_RS10215 (UHR80_10215) | - | 2186489..2187181 (+) | 693 | WP_014568882.1 | CPBP family intramembrane glutamic endopeptidase | - |
| UHR80_RS10220 (UHR80_10220) | - | 2187497..2187826 (-) | 330 | WP_155736656.1 | hypothetical protein | - |
| UHR80_RS10225 (UHR80_10225) | - | 2187944..2188549 (-) | 606 | WP_223804818.1 | ABC transporter permease | - |
| UHR80_RS10230 (UHR80_10230) | - | 2188655..2190073 (+) | 1419 | WP_003605947.1 | IS5-like element ISLrh3 family transposase | - |
| UHR80_RS10235 (UHR80_10235) | - | 2190288..2191196 (-) | 909 | WP_014568886.1 | ABC transporter ATP-binding protein | - |
Sequence
Protein
Download Length: 196 a.a. Molecular weight: 20932.66 Da Isoelectric Point: 4.9056
>NTDB_id=917063 UHR80_RS10160 WP_005709832.1 2176259..2176849(+) (ssb) [Lacticaseibacillus rhamnosus strain S262-4W]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSLVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPSNAPSSNPGQ
NPAAGQNQGNNGNAANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 591 bp
>NTDB_id=917063 UHR80_RS10160 WP_005709832.1 2176259..2176849(+) (ssb) [Lacticaseibacillus rhamnosus strain S262-4W]
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGTTTAACCAGAGATGTTGACTTGCGCTATACGCAAAGTGGGACAGCTGTCGG
TTCATTCACTTTGGCCGTTGATCGCCAGTTCCGCAGTGCAAACGGCGAACGGGAAACCGACTTCATTAATTGTGTGATCT
GGCGTAAGTCAGCGGAGAATTTCGCTAACTTCACCAAGAAGGGATCATTGGTTGGTGTTGAAGGTCACATTCAAACACGT
ACTTACGATAATGCGCAAGGACAGAAAGTTTATGTGACTGAAGTTGTCGTTGAAAACTTTGCGTTACTGGAGTCACGGGC
AACCACCCAACAGCGGCCATCCGAACCTGCTAATCCTGCAGGTCAGGGAAATCAGAACTATGGCGGGGGACAGCAGTTTG
GCAACAACCAGCCGCAAAATCCGCCTAGCTTTGGCTCTCAAGGCGCCCCAAGTAATGCACCATCATCGAATCCGGGACAA
AACCCGGCAGCAGGTCAGAACCAAGGTAACAACGGTAATGCTGCTAATCCTGATCCATTTGCCAATAACGGCAAACCGAT
CGACATTTCCGATGATGATCTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
60.204 |
100 |
0.602 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
49.749 |
100 |
0.505 |