Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | T1M39_RS11745 | Genome accession | NZ_CP141327 |
| Coordinates | 2428841..2429437 (+) | Length | 198 a.a. |
| NCBI ID | WP_003568462.1 | Uniprot ID | A0A0C9PXZ6 |
| Organism | Lacticaseibacillus paracasei strain S135-24W | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2418902..2443611 | 2428841..2429437 | within | 0 |
Gene organization within MGE regions
Location: 2418902..2443611
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| T1M39_RS11705 (T1M39_11705) | dnaN | 2418902..2420041 (+) | 1140 | WP_003568447.1 | DNA polymerase III subunit beta | - |
| T1M39_RS11710 (T1M39_11710) | yaaA | 2420619..2420831 (+) | 213 | WP_003568449.1 | S4 domain-containing protein YaaA | - |
| T1M39_RS11715 (T1M39_11715) | recF | 2420828..2421943 (+) | 1116 | WP_003572804.1 | DNA replication/repair protein RecF | - |
| T1M39_RS11720 (T1M39_11720) | gyrB | 2422196..2424156 (+) | 1961 | Protein_2273 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| T1M39_RS11725 (T1M39_11725) | gyrA | 2424218..2426839 (+) | 2622 | WP_003581640.1 | DNA gyrase subunit A | - |
| T1M39_RS11730 (T1M39_11730) | deoC | 2426944..2427648 (-) | 705 | WP_003568456.1 | deoxyribose-phosphate aldolase | - |
| T1M39_RS11735 (T1M39_11735) | ssb | 2427955..2428386 (+) | 432 | WP_003568458.1 | single-stranded DNA-binding protein | - |
| T1M39_RS11740 (T1M39_11740) | rpsF | 2428514..2428810 (+) | 297 | WP_003568460.1 | 30S ribosomal protein S6 | - |
| T1M39_RS11745 (T1M39_11745) | ssb | 2428841..2429437 (+) | 597 | WP_003568462.1 | single-stranded DNA-binding protein | Machinery gene |
| T1M39_RS11750 (T1M39_11750) | rpsR | 2429524..2429760 (+) | 237 | WP_003568467.1 | 30S ribosomal protein S18 | - |
| T1M39_RS11755 (T1M39_11755) | - | 2430201..2431679 (+) | 1479 | WP_003568469.1 | cytochrome ubiquinol oxidase subunit I | - |
| T1M39_RS11760 (T1M39_11760) | cydB | 2431672..2432691 (+) | 1020 | WP_003568540.1 | cytochrome d ubiquinol oxidase subunit II | - |
| T1M39_RS11765 (T1M39_11765) | - | 2432718..2432912 (+) | 195 | WP_003568474.1 | hypothetical protein | - |
| T1M39_RS11770 (T1M39_11770) | - | 2432985..2433578 (-) | 594 | WP_003572821.1 | TMEM175 family protein | - |
| T1M39_RS11775 (T1M39_11775) | - | 2433926..2434846 (+) | 921 | WP_003574021.1 | IS30 family transposase | - |
| T1M39_RS11780 (T1M39_11780) | - | 2435030..2435424 (-) | 395 | Protein_2285 | hypothetical protein | - |
| T1M39_RS11785 (T1M39_11785) | - | 2435637..2435939 (-) | 303 | WP_003568478.1 | hypothetical protein | - |
| T1M39_RS11790 (T1M39_11790) | - | 2436217..2437074 (-) | 858 | WP_003568480.1 | CPBP family intramembrane glutamic endopeptidase | - |
| T1M39_RS11795 (T1M39_11795) | - | 2437154..2437336 (-) | 183 | WP_003568482.1 | hypothetical protein | - |
| T1M39_RS11800 (T1M39_11800) | - | 2437387..2437566 (-) | 180 | WP_003659010.1 | hypothetical protein | - |
| T1M39_RS11805 (T1M39_11805) | - | 2438055..2439290 (-) | 1236 | WP_003568484.1 | cell wall hydrolase P40 | - |
| T1M39_RS11810 (T1M39_11810) | - | 2439494..2442066 (-) | 2573 | Protein_2291 | FtsX-like permease family protein | - |
| T1M39_RS11815 (T1M39_11815) | - | 2442079..2442780 (-) | 702 | WP_003568488.1 | ABC transporter ATP-binding protein | - |
| T1M39_RS11820 (T1M39_11820) | - | 2443060..2443611 (+) | 552 | WP_003568490.1 | TetR/AcrR family transcriptional regulator | - |
Sequence
Protein
Download Length: 198 a.a. Molecular weight: 21138.87 Da Isoelectric Point: 4.9056
>NTDB_id=917034 T1M39_RS11745 WP_003568462.1 2428841..2429437(+) (ssb) [Lacticaseibacillus paracasei strain S135-24W]
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
MLNSVALTGRLTRDVDLRYTQSGTAVGSFTLAVDRQFRSANGERETDFINCVIWRKSAENFANFTKKGSMVGVEGHIQTR
TYDNAQGQKVYVTEVVVENFALLESRATTQQRPSEPANPAGQGNQNYGGGQQFGNNQPQNPPSFGSQGAPNNASSSNPGQ
NPAASQNQGGNSAANPANPDPFANNGKPIDISDDDLPF
Nucleotide
Download Length: 597 bp
>NTDB_id=917034 T1M39_RS11745 WP_003568462.1 2428841..2429437(+) (ssb) [Lacticaseibacillus paracasei strain S135-24W]
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCTATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
ATGCTTAACAGTGTTGCATTGACAGGTCGATTAACCAGAGATGTTGATTTGCGTTACACGCAAAGTGGCACGGCTGTCGG
TTCTTTCACGCTGGCCGTTGACCGCCAGTTCCGCAGTGCAAACGGCGAACGTGAAACTGACTTCATCAATTGTGTGATCT
GGCGTAAGTCTGCAGAGAACTTTGCAAACTTCACCAAAAAAGGATCTATGGTTGGAGTTGAAGGCCATATCCAAACGCGT
ACGTATGATAACGCGCAAGGACAAAAGGTCTATGTGACCGAAGTCGTCGTTGAAAACTTTGCGTTGCTGGAATCCCGGGC
AACGACTCAACAGCGGCCGTCCGAACCGGCAAATCCAGCTGGCCAAGGTAATCAGAACTATGGCGGCGGGCAGCAGTTTG
GCAATAACCAACCGCAGAATCCGCCAAGTTTTGGTTCACAAGGCGCCCCGAACAATGCATCATCATCGAATCCGGGTCAA
AATCCGGCAGCAAGTCAGAACCAAGGAGGCAACTCCGCGGCTAACCCTGCTAATCCCGATCCGTTTGCTAATAATGGCAA
GCCGATCGACATTTCCGATGATGATTTGCCATTCTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
59.296 |
100 |
0.596 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
48.485 |
100 |
0.485 |