Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   QZD84_RS13460 Genome accession   NZ_CP141290
Coordinates   2863974..2864588 (+) Length   204 a.a.
NCBI ID   WP_005479697.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain BM26A     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 2858974..2869588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZD84_RS13440 - 2859261..2860178 (-) 918 WP_021450010.1 ABC transporter ATP-binding protein -
  QZD84_RS13445 - 2860430..2862100 (-) 1671 WP_045601888.1 SulP family inorganic anion transporter -
  QZD84_RS13450 can 2862384..2863052 (+) 669 WP_005462578.1 carbonate dehydratase -
  QZD84_RS13455 hpt 2863127..2863657 (-) 531 WP_005462585.1 hypoxanthine phosphoribosyltransferase -
  QZD84_RS13460 opaR 2863974..2864588 (+) 615 WP_005479697.1 transcriptional regulator OpaR Regulator
  QZD84_RS13465 lpdA 2864716..2866143 (-) 1428 WP_005479684.1 dihydrolipoyl dehydrogenase -
  QZD84_RS13470 aceF 2866412..2868298 (-) 1887 WP_031847487.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -

Sequence

Protein


Download         Length: 204 a.a.        Molecular weight: 23634.94 Da        Isoelectric Point: 6.0781

>NTDB_id=916977 QZD84_RS13460 WP_005479697.1 2863974..2864588(+) (opaR) [Vibrio parahaemolyticus strain BM26A]
MDSIAKRPRTRLSPLKRKQQLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHARENIANITNAMIELVSQDCHWLKVWFEWSASTRDEVWPLFVSTNRTNQLLVQNMFIKAIERGEVCDQHDSE
HLANLFHGICYSLFVQANRFKGEAELKELVSAYLDMLCIYNREH

Nucleotide


Download         Length: 615 bp        

>NTDB_id=916977 QZD84_RS13460 WP_005479697.1 2863974..2864588(+) (opaR) [Vibrio parahaemolyticus strain BM26A]
ATGGACTCAATTGCAAAGAGACCTAGAACTAGGCTTTCTCCTCTTAAACGTAAGCAACAACTCATGGAAATCGCGTTAGA
AGTATTTGCACGCCGTGGTATTGGCCGTGGTGGTCACGCAGATATTGCTGAAATTGCGCAAGTGTCTGTTGCAACCGTTT
TTAACTACTTCCCAACTCGCGAAGATTTGGTTGATGAAGTTCTCAACCATGTTGTCCGTCAGTTCTCGAATTTCCTTTCG
GATAACATCGACCTAGACATACACGCTCGTGAAAACATCGCAAACATCACCAATGCGATGATCGAGCTCGTAAGCCAAGA
TTGTCACTGGCTGAAAGTTTGGTTCGAGTGGAGCGCATCAACTCGTGATGAAGTTTGGCCTCTATTTGTGTCTACCAACC
GCACTAACCAATTACTGGTTCAAAACATGTTCATTAAAGCGATTGAACGCGGTGAAGTGTGTGATCAACACGATTCAGAA
CACTTGGCAAATCTATTCCACGGTATTTGTTACTCGCTGTTCGTACAAGCAAACCGCTTCAAAGGTGAAGCTGAGTTGAA
AGAACTCGTGAGCGCTTACCTAGATATGCTTTGCATCTACAATCGCGAACACTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  hapR Vibrio cholerae C6706

72.222

97.059

0.701
  hapR Vibrio cholerae strain A1552

72.222

97.059

0.701