Detailed information    

insolico Bioinformatically predicted

Overview

Name   opaR   Type   Regulator
Locus tag   OCV19_RS02715 Genome accession   NZ_AP025463
Coordinates   543138..543743 (-) Length   201 a.a.
NCBI ID   WP_019824386.1    Uniprot ID   A0A1E5FTC6
Organism   Vibrio celticus strain CECT 7224     
Function   regulation of Dns (predicted from homology)   
Competence regulation

Genomic Context

Location: 538138..548743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OCV19_RS02705 aceF 539311..541203 (+) 1893 WP_065676627.1 pyruvate dehydrogenase complex dihydrolipoyllysine-residue acetyltransferase -
  OCV19_RS02710 lpdA 541446..542876 (+) 1431 WP_048659365.1 dihydrolipoyl dehydrogenase -
  OCV19_RS02715 opaR 543138..543743 (-) 606 WP_019824386.1 LuxR/HapR/OpaR family quorum-sensing transcriptional regulator Regulator
  OCV19_RS02720 hpt 544081..544611 (+) 531 WP_017059438.1 hypoxanthine phosphoribosyltransferase -
  OCV19_RS02725 can 544686..545354 (-) 669 WP_017059437.1 carbonate dehydratase -
  OCV19_RS02730 - 545641..547272 (+) 1632 WP_170926823.1 SulP family inorganic anion transporter -
  OCV19_RS02735 - 547608..548525 (+) 918 WP_065676628.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 23208.45 Da        Isoelectric Point: 6.2915

>NTDB_id=91696 OCV19_RS02715 WP_019824386.1 543138..543743(-) (opaR) [Vibrio celticus strain CECT 7224]
MDSISKRPRTRLSPLKRKLQLMEIALEVFSRRGIGRGGHADIADIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLS
DNIDLDIHAKQNLHNIATEMVTLVAQDSHWLNVWFEWSASTRDEVWPLFVTTNRTNQMLVQNMFSKAIERGEVCDDHDPK
HLANLFHGICYSLFIQAKRVETPEELSSLTDSYLNMLCIYK

Nucleotide


Download         Length: 606 bp        

>NTDB_id=91696 OCV19_RS02715 WP_019824386.1 543138..543743(-) (opaR) [Vibrio celticus strain CECT 7224]
ATGGACTCAATCTCTAAGAGACCTAGAACTAGGCTTTCACCTTTAAAAAGAAAACTTCAGCTGATGGAAATCGCGCTTGA
AGTGTTCTCTCGTCGCGGCATTGGCCGTGGTGGTCACGCTGACATTGCAGATATCGCTCAGGTATCAGTAGCAACAGTAT
TTAACTACTTCCCTACTCGTGAAGATCTGGTTGATGAAGTGCTTAATCATGTTGTCCGTCAATTCTCAAACTTCCTTTCA
GACAATATCGATCTAGATATTCACGCAAAACAAAACCTACATAATATTGCGACTGAAATGGTGACACTAGTAGCTCAAGA
CAGCCACTGGTTGAACGTATGGTTCGAATGGAGCGCATCGACTCGTGATGAAGTATGGCCACTGTTCGTAACAACAAACC
GCACTAACCAAATGTTAGTCCAGAACATGTTTAGTAAAGCGATTGAGCGCGGCGAAGTTTGTGACGATCACGATCCTAAG
CATCTAGCGAACCTATTCCACGGCATCTGCTACTCGCTATTCATCCAAGCGAAACGTGTAGAAACACCTGAAGAGCTTTC
AAGCTTAACAGATAGCTACTTAAACATGCTGTGCATTTATAAATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, tetR family (TetR_N)

(22-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1E5FTC6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  opaR Vibrio parahaemolyticus RIMD 2210633

82.5

99.502

0.821
  hapR Vibrio cholerae C6706

73.367

99.005

0.726
  hapR Vibrio cholerae strain A1552

73.367

99.005

0.726

Multiple sequence alignment