Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QZL39_RS14600 Genome accession   NZ_CP141287
Coordinates   3091010..3091588 (-) Length   192 a.a.
NCBI ID   WP_015297396.1    Uniprot ID   A0A243VIJ8
Organism   Vibrio parahaemolyticus strain I14B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3086010..3096588
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL39_RS14575 aroB 3086300..3087400 (-) 1101 WP_308390555.1 3-dehydroquinate synthase -
  QZL39_RS14580 aroK 3087432..3087950 (-) 519 WP_005381319.1 shikimate kinase AroK -
  QZL39_RS14585 pilQ 3088139..3089887 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  QZL39_RS14590 pilP 3089919..3090434 (-) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  QZL39_RS14595 pilO 3090424..3091017 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  QZL39_RS14600 pilN 3091010..3091588 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QZL39_RS14605 pilM 3091572..3092588 (-) 1017 WP_005496568.1 type IV pilus assembly protein PilM Machinery gene
  QZL39_RS14610 - 3092731..3095301 (+) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -
  QZL39_RS14615 oxyR 3095357..3096265 (-) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22438.95 Da        Isoelectric Point: 6.9944

>NTDB_id=916946 QZL39_RS14600 WP_015297396.1 3091010..3091588(-) (pilN) [Vibrio parahaemolyticus strain I14B]
MLYRINLLPWRENQREEHRRRFVGLVVLGVMVALGIQWGVGKYYEYQQDLQQERLDYLTTYISDLDKRIEAMKIAELEHS
KILERLKVVEALQNGRNKTTDFMNLMPAVIPEGVYVDKIKMNDLEIEISGISDSTPRLATMLDNMERSAKLLDVEMHSIV
HGKARFGKEFQTFKVSFMFNTVEEKKEGKQHG

Nucleotide


Download         Length: 579 bp        

>NTDB_id=916946 QZL39_RS14600 WP_015297396.1 3091010..3091588(-) (pilN) [Vibrio parahaemolyticus strain I14B]
GTGCTGTATCGCATTAACTTATTGCCTTGGCGCGAAAATCAAAGGGAAGAGCATCGTCGTCGATTTGTCGGTTTAGTGGT
ATTGGGCGTCATGGTGGCGTTGGGGATTCAGTGGGGCGTTGGCAAATATTATGAGTACCAACAAGATCTTCAACAAGAGC
GACTCGACTATCTAACAACGTACATTTCTGATCTAGATAAGCGGATAGAAGCGATGAAGATCGCGGAGCTTGAACACAGC
AAAATCTTGGAACGCTTGAAAGTTGTGGAAGCGTTGCAAAATGGTCGGAATAAAACCACTGATTTTATGAACCTCATGCC
TGCTGTTATTCCAGAAGGCGTGTATGTCGACAAGATCAAAATGAACGATCTAGAAATTGAAATCTCAGGTATTTCAGACA
GTACACCACGGCTAGCAACCATGCTCGATAACATGGAACGTTCTGCCAAGCTACTGGACGTTGAAATGCACTCTATCGTG
CACGGAAAAGCCCGTTTTGGTAAAGAGTTTCAGACCTTTAAAGTGTCCTTCATGTTTAACACGGTAGAAGAGAAGAAAGA
GGGAAAACAACATGGTTAA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(103-176)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A243VIJ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Vibrio campbellii strain DS40M4

83.333

100

0.833
  pilN Vibrio cholerae strain A1552

62.983

94.271

0.594