Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   QZL39_RS14590 Genome accession   NZ_CP141287
Coordinates   3089919..3090434 (-) Length   171 a.a.
NCBI ID   WP_005480477.1    Uniprot ID   Q87L65
Organism   Vibrio parahaemolyticus strain I14B     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3084919..3095434
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QZL39_RS14575 aroB 3086300..3087400 (-) 1101 WP_308390555.1 3-dehydroquinate synthase -
  QZL39_RS14580 aroK 3087432..3087950 (-) 519 WP_005381319.1 shikimate kinase AroK -
  QZL39_RS14585 pilQ 3088139..3089887 (-) 1749 WP_005488227.1 type IV pilus secretin PilQ family protein Machinery gene
  QZL39_RS14590 pilP 3089919..3090434 (-) 516 WP_005480477.1 pilus assembly protein PilP Machinery gene
  QZL39_RS14595 pilO 3090424..3091017 (-) 594 WP_005480482.1 type 4a pilus biogenesis protein PilO Machinery gene
  QZL39_RS14600 pilN 3091010..3091588 (-) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  QZL39_RS14605 pilM 3091572..3092588 (-) 1017 WP_005496568.1 type IV pilus assembly protein PilM Machinery gene
  QZL39_RS14610 - 3092731..3095301 (+) 2571 WP_005496567.1 PBP1A family penicillin-binding protein -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18928.09 Da        Isoelectric Point: 10.5314

>NTDB_id=916944 QZL39_RS14590 WP_005480477.1 3089919..3090434(-) (pilP) [Vibrio parahaemolyticus strain I14B]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGVESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=916944 QZL39_RS14590 WP_005480477.1 3089919..3090434(-) (pilP) [Vibrio parahaemolyticus strain I14B]
ATGAGAAATAAATCTTTGCTGACGGTGTTGGTAAGCGCTCTATTGGTCGGGTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTGTTGAGAGCCAGGCTCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCAACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTACAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCTTACTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87L65

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.626

100

0.836
  pilP Vibrio cholerae strain A1552

58.14

100

0.585