Detailed information NTG0916933

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QZL39_RS13310
• Genome accession: NZ_CP141287
• Coordinates: 2839804..2840673 (+)
• Length: 289 a.a.
• NCBI ID: WP_025533026.1
• Uniprot ID: A0AA41A9T5
• Organism: Vibrio parahaemolyticus strain I14B
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2834804..2845673

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QZL39_RS13290	nadC	2835198..2836085 (+)	888	WP_025638275.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QZL39_RS13295	-	2836349..2836807 (+)	459	WP_021486793.1	prepilin-type N-terminal cleavage/methylation domain-containing protein	-
QZL39_RS13300	pilB	2836807..2838492 (+)	1686	WP_029855968.1	type IV-A pilus assembly ATPase PilB	Machinery gene
QZL39_RS13305	pilC	2838516..2839739 (+)	1224	WP_005479682.1	type II secretion system F family protein	Machinery gene
QZL39_RS13310	pilD	2839804..2840673 (+)	870	WP_025533026.1	A24 family peptidase	Machinery gene
QZL39_RS13315	coaE	2840674..2841288 (+)	615	WP_005480887.1	dephospho-CoA kinase	-
QZL39_RS13320	zapD	2841316..2842056 (+)	741	WP_023624252.1	cell division protein ZapD	-
QZL39_RS13325	yacG	2842125..2842319 (+)	195	WP_005462546.1	DNA gyrase inhibitor YacG	-
QZL39_RS13330	rplS	2842756..2843109 (-)	354	WP_005462554.1	50S ribosomal protein L19	-
QZL39_RS13335	trmD	2843151..2843894 (-)	744	WP_005462562.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
QZL39_RS13340	rimM	2843922..2844470 (-)	549	WP_005462552.1	ribosome maturation factor RimM	-
QZL39_RS13345	rpsP	2844499..2844747 (-)	249	WP_005379962.1	30S ribosomal protein S16	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32405.49 Da
• Isoelectric Point: 7.1971

>NTDB_id=916933 QZL39_RS13310 WP_025533026.1 2839804..2840673(+) (pilD) [Vibrio parahaemolyticus strain I14B]
MEVFQYYPWLFVVFASIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIKPPQEVLTLSVPRSSCQNCATPIRIR
DNIPVISWLLLKGKCHHCHTAISPRYPLIELLTAACAGFVAYHFGFSYFTVALIFFTFVLIAATFIDLDTMLLPDQLTLP
LTWAGIALALTEISPVSLQDAVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGV
IFGLVQLRLQKQGIERAFPFGPYLAIAGWVSLIWGDQILSWYFTSILGV

Nucleotide

• Length: 870 bp

>NTDB_id=916933 QZL39_RS13310 WP_025533026.1 2839804..2840673(+) (pilD) [Vibrio parahaemolyticus strain I14B]
ATGGAAGTGTTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCAGTATCTTCGGTTTAATTGTGGGTAGTTTTCTTAA
TGTGGTCATTTATCGGCTACCTAAAATCATGGAATTAGAATGGCGCCGTGAATGCGCCGAATCATTCCCTGAATATAAGA
TTAAGCCACCTCAAGAAGTTTTGACATTGAGCGTGCCTCGCTCTTCGTGCCAAAACTGCGCGACGCCAATTCGTATTCGA
GACAATATTCCAGTAATCAGCTGGCTATTGTTAAAAGGAAAATGCCATCATTGTCATACCGCAATTAGTCCTCGCTATCC
GCTGATAGAATTACTCACTGCAGCGTGCGCTGGCTTTGTGGCTTATCATTTCGGCTTTAGCTACTTTACGGTTGCGTTAA
TCTTTTTCACATTTGTCTTAATAGCCGCGACTTTTATCGATCTCGATACTATGCTGCTACCGGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCGTTAGCATTAACAGAAATAAGCCCTGTTAGTCTACAAGACGCCGTAATTGGTGCGATTGC
CGGTTATTTGTGTCTTTGGTCAGTATATTGGGGGTTCAAACTGCTTACTGGTAAAGAAGGCATGGGTTACGGTGATTTTA
AATTGCTGGCTGCCCTTGGCGCTTGGCTAGGATGGCAATCATTACCAATGATCATCCTACTTTCTTCCGTCGTCGGTGTG
ATATTCGGGCTAGTCCAGTTACGACTACAAAAACAAGGTATAGAGAGAGCTTTCCCTTTCGGCCCATATTTAGCGATTGC
AGGATGGGTGAGCTTAATCTGGGGCGATCAAATTCTAAGTTGGTACTTCACGTCAATTTTAGGGGTGTAA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (135-244)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	89.273	100	0.893
pilD	Vibrio cholerae strain A1552	73.611	99.654	0.734
pilD	Acinetobacter baumannii D1279779	52.612	92.734	0.488
pilD	Acinetobacter nosocomialis M2	52.239	92.734	0.484
pilD	Neisseria gonorrhoeae MS11	47.101	95.502	0.45