Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   U4959_RS14355 Genome accession   NZ_CP141284
Coordinates   2974927..2975586 (+) Length   219 a.a.
NCBI ID   WP_005403261.1    Uniprot ID   D0SN63
Organism   Acinetobacter junii strain H1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2969927..2980586
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  U4959_RS14340 (U4959_14340) - 2970961..2971926 (-) 966 WP_151711279.1 putative solute-binding protein -
  U4959_RS14345 (U4959_14345) - 2972051..2972869 (-) 819 WP_324272868.1 NAD-dependent epimerase/dehydratase family protein -
  U4959_RS14350 (U4959_14350) recG 2972889..2974934 (+) 2046 WP_004964361.1 ATP-dependent DNA helicase RecG -
  U4959_RS14355 (U4959_14355) comF 2974927..2975586 (+) 660 WP_005403261.1 ComF family protein Machinery gene
  U4959_RS14360 (U4959_14360) - 2975576..2975962 (-) 387 WP_005403262.1 NUDIX hydrolase -
  U4959_RS14365 (U4959_14365) - 2975972..2976556 (-) 585 WP_004964372.1 TIGR00730 family Rossman fold protein -
  U4959_RS14370 (U4959_14370) - 2976707..2977720 (+) 1014 WP_004964376.1 magnesium and cobalt transport protein CorA -
  U4959_RS14375 (U4959_14375) - 2977722..2978249 (+) 528 WP_201898016.1 hypothetical protein -
  U4959_RS14380 (U4959_14380) - 2978304..2978591 (-) 288 WP_004964385.1 lipid asymmetry maintenance protein MlaB -
  U4959_RS14385 (U4959_14385) - 2978603..2979235 (-) 633 WP_004909421.1 phospholipid-binding protein MlaC -
  U4959_RS14390 (U4959_14390) - 2979255..2979929 (-) 675 WP_004909422.1 outer membrane lipid asymmetry maintenance protein MlaD -

Sequence

Protein


Download         Length: 219 a.a.        Molecular weight: 25003.22 Da        Isoelectric Point: 8.8068

>NTDB_id=916894 U4959_RS14355 WP_005403261.1 2974927..2975586(+) (comF) [Acinetobacter junii strain H1]
MFKLLSRGAQQVADYFTACHLCDIGVRAHHGVCQSCWQQLPWLKHKIERHQQDILVACHYEYPISQLIQQFKYEQQLHHL
RLLSGLLLELKLPKVHAIVPMPISNDRLMERGFNQSLLIAKELSKVLNIPVWQPVQRLAQHSQKGLSRLERLENIEDQFV
AKTHLQLIYRKVLIIDDVVTTGSSINALSQVLKQLGCQHIYSACLAAGGVKQANHDVIA

Nucleotide


Download         Length: 660 bp        

>NTDB_id=916894 U4959_RS14355 WP_005403261.1 2974927..2975586(+) (comF) [Acinetobacter junii strain H1]
ATGTTTAAATTATTGAGCCGAGGAGCACAACAAGTTGCTGATTATTTCACAGCATGTCACTTATGCGATATTGGTGTCAG
AGCACACCATGGTGTTTGTCAAAGTTGCTGGCAACAATTACCATGGTTAAAACATAAAATCGAACGACATCAGCAAGATA
TACTTGTTGCCTGTCATTATGAATATCCGATCAGCCAACTCATTCAACAATTTAAATACGAGCAACAGTTACATCATCTT
CGATTACTTAGCGGACTATTACTGGAACTTAAGCTGCCAAAAGTACATGCCATCGTACCAATGCCTATTTCAAATGATCG
ACTGATGGAAAGAGGTTTCAATCAATCACTTTTAATCGCTAAGGAACTGAGCAAAGTATTGAATATTCCAGTATGGCAGC
CCGTGCAACGACTAGCCCAACATTCTCAAAAAGGTTTAAGCCGCTTAGAGCGACTGGAAAATATAGAAGATCAATTTGTC
GCTAAAACACATCTTCAATTGATTTATAGAAAAGTGCTGATTATTGATGATGTCGTGACCACAGGCAGCTCTATCAATGC
CCTCAGTCAAGTATTAAAACAGTTGGGGTGCCAACATATATACTCAGCCTGTTTAGCCGCTGGTGGTGTTAAACAGGCAA
ATCATGATGTTATTGCTTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(166-215)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D0SN63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

64.115

95.434

0.612
  comF Acinetobacter baumannii D1279779

63.636

95.434

0.607